PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA03g02620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GRAS | ||||||||
Protein Properties | Length: 250aa MW: 28151.3 Da PI: 6.3607 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 89.7 | 4.6e-28 | 53 | 225 | 2 | 172 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl....fse..vsPilkf 93 elL + A+ v+++++ + ++l + ++ as +g+++q+++ yf+ AL +r++r++ ++ + + + +n ++e ++ l f + + + + CA03g02620 53 AELLQASAQLVATRSFDRGRKLPSLCNQSASATGTAVQKIVYYFADALLHRINRETGKIPFTGEEDMNVYSNdTEEFIMD--LepaeFAKrpLYAYRQA 149 5789999***********************************************66655544433322222223333333..33465543225567899 PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg.ppslRiTgvgspesgskeeleetgerLakfAeel 172 +++t qaIl+++ ++++vH iD++++ G QW +++q a+R+e +l+iT+vg+ s++++e +g+rL+ fA+e+ CA03g02620 150 TQFTGIQAILDSTITAKKVHLIDLSVKSGSQWTTFMQVVADRDEFlLEHLKITAVGR----STKMMEDVGRRLSAFAAET 225 9******************************************66267*********....99*************9874 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 18.577 | 26 | 249 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-25 | 53 | 225 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MLFLESMIYP KEPLYLSSRR KVCVQSSLED LTCEITLANS GVSPELVQDV DLAELLQASA 60 QLVATRSFDR GRKLPSLCNQ SASATGTAVQ KIVYYFADAL LHRINRETGK IPFTGEEDMN 120 VYSNDTEEFI MDLEPAEFAK RPLYAYRQAT QFTGIQAILD STITAKKVHL IDLSVKSGSQ 180 WTTFMQVVAD RDEFLLEHLK ITAVGRSTKM MEDVGRRLSA FAAETLQCQL LLLRHYKTYH 240 FASKQLFQT* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 5e-69 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015160788.1 | 1e-109 | PREDICTED: scarecrow-like protein 28 | ||||
TrEMBL | A0A2G2ZU69 | 0.0 | A0A2G2ZU69_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400003954 | 1e-108 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8500 | 17 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 1e-13 | RGA-like 2 |