PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g02360
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 277aa    MW: 30385.2 Da    PI: 8.6414
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g02360genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.91.6e-19193227135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cg+ +Tp+WR gp g+ktLCnaCG++y++ +l
  CA03g02360 193 CQHCGADQTPQWRAGPLGPKTLCNACGVRYKSGRL 227
                 *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.176187223IPR000679Zinc finger, GATA-type
SMARTSM004011.7E-16187241IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.71E-15189250No hitNo description
Gene3DG3DSA:3.30.50.109.1E-15191225IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.67E-15192241No hitNo description
PROSITE patternPS003440193218IPR000679Zinc finger, GATA-type
PfamPF003203.5E-17193227IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDALDPTSAA CFMVDDDLLN FSLEDDEDDE KSTTTSKNNP TSYSSQSSNN PLVDNLLPLN  60
HPECVEEELE WLSNKDAFPA IEFGILSDNP GMVFDHHSPV SVLENSSSTS HSSGNGVASG  120
NAYMSCSANL KVPVNYPVRA RSKRRRRRRR GGFADMPSER CLPVKQASFK NVKKREPLLS  180
LPRKSAANIG RKCQHCGADQ TPQWRAGPLG PKTLCNACGV RYKSGRLLPE YRPANSPTFS  240
PSVHSNSHRK VLEMRKHKIG VGGMLIHEAC GYRVGQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140149RSKRRRRRRR
2142147KRRRRR
3143149RRRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016566407.10.0PREDICTED: GATA transcription factor 1-like
TrEMBLA0A1U8G4Y00.0A0A1U8G4Y0_CAPAN; Uncharacterized protein
TrEMBLA0A2G2VZW50.0A0A2G2VZW5_CAPBA; Uncharacterized protein
TrEMBLA0A2G2ZU290.0A0A2G2ZU29_CAPAN; GATA transcription factor 1-like
STRINGXP_009767386.11e-143(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-39GATA transcription factor 1