PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g31050

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRAS

Protein Properties

Length: 376aa MW: 41897.1 Da PI: 6.8294

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g31050	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	440.7	1e-134	10	374	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPilkfshlt 97 lv+lLl+cAeavs++d la+++L +l+ ++p gd+mqR+a++fteAL+arla + + ++ +p++ ++ s e l++++++++++P++kf+h+t CA02g31050 10 LVHLLLACAEAVSKEDYMLARRYLHHLNRVVTPIGDSMQRVASCFTEALSARLAATLATKPSTSNPKPFNPFPpnSLEILKIYQILYQACPYVKFAHFT 108 68**************************************************965555555555555433244******************** PP GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 aNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+ s e+++etg+ L+++A++l+vpfef++ v ++ledl++++++ CA02g31050 109 ANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGP----SPEAVRETGRCLTELAHSLHVPFEFHP-VGEQLEDLKPHMFNR 202 ************************************************....9**********************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 + gEalaVn+v +lhr++ ++ ++L ++++ P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p +s++r+k+E+ ++g+ei+ CA02g31050 203 RIGEALAVNSVNRLHRVP--GN----CIGNLLAMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPGDSSQRAKLEQYIFGPEIM 295 *************9..33....4446***************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 n+v+ceg+er+ rhe+lekWr+ +e GFk v+ls +a++q k ll ++ dgy++ e++g+l+lgW+dr+++++SaWr CA02g31050 296 NIVSCEGTERVVRHERLEKWRRVMEGKGFKGVALSANAVTQSKILLGLYSCDGYKLTEDNGCLLLGWQDRAILAASAWR 374 ****************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	68.014	1	354	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-132	10	374	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MQEQDSGLQL VHLLLACAEA VSKEDYMLAR RYLHHLNRVV TPIGDSMQRV ASCFTEALSA 60 RLAATLATKP STSNPKPFNP FPPNSLEILK IYQILYQACP YVKFAHFTAN QAIFEAFEAE 120 ERVHVIDLDI LQGYQWPAFM QALAARPGGA PFLRITGVGP SPEAVRETGR CLTELAHSLH 180 VPFEFHPVGE QLEDLKPHMF NRRIGEALAV NSVNRLHRVP GNCIGNLLAM IRDQAPNIVT 240 IVEQEASHNG PYFLGRFLEA LHYYSAIFDS LDATFPGDSS QRAKLEQYIF GPEIMNIVSC 300 EGTERVVRHE RLEKWRRVME GKGFKGVALS ANAVTQSKIL LGLYSCDGYK LTEDNGCLLL 360 GWQDRAILAA SAWRC*

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MQEQDSGLQL VHLLLACAEA VSKEDYMLAR RYLHHLNRVV TPIGDSMQRV ASCFTEALSA  60
RLAATLATKP STSNPKPFNP FPPNSLEILK IYQILYQACP YVKFAHFTAN QAIFEAFEAE  120
ERVHVIDLDI LQGYQWPAFM QALAARPGGA PFLRITGVGP SPEAVRETGR CLTELAHSLH  180
VPFEFHPVGE QLEDLKPHMF NRRIGEALAV NSVNRLHRVP GNCIGNLLAM IRDQAPNIVT  240
IVEQEASHNG PYFLGRFLEA LHYYSAIFDS LDATFPGDSS QRAKLEQYIF GPEIMNIVSC  300
EGTERVVRHE RLEKWRRVME GKGFKGVALS ANAVTQSKIL LGLYSCDGYK LTEDNGCLLL  360
GWQDRAILAA SAWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-102	2	373	10	378	Protein SCARECROW
5b3h_A	1e-102	2	373	9	377	Protein SCARECROW
5b3h_D	1e-102	2	373	9	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269\|PubMed:23122845}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269\|PubMed:23122845}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215432	0.0	AC215432.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0257H21, complete sequence.
GenBank	AC215457	0.0	AC215457.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0061K08, complete sequence.
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016561751.1	0.0	PREDICTED: DELLA protein RGL2-like
Swissprot	G7L166	0.0	RAM1_MEDTR; GRAS family protein RAM1
TrEMBL	A0A2G2XIZ6	0.0	A0A2G2XIZ6_CAPBA; Uncharacterized protein
STRING	Solyc02g094340.1.1	0.0	(Solanum lycopersicum)
STRING	PGSC0003DMT400052191	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12566	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	1e-101	RGA-like 1

Publications ? help Back to Top
Tang H, et al. An improved genome release (version Mt4.0) for the model legume Medicago truncatula. BMC Genomics, 2014. 15: p. 312 [PMID:24767513] Pecrix Y, et al. Whole-genome landscape of Medicago truncatula symbiotic genes. Nat Plants, 2018. 4(12): p. 1017-1025 [PMID:30397259]