PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA02g29740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 199aa MW: 22906.4 Da PI: 7.2153 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.1 | 8.7e-18 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ ar g++Rt+k+c++rw++yl CA02g29740 15 KGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYL 62 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 35.1 | 3.2e-11 | 68 | 107 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++l+ ++++ + W++Ia++++ gRt++++k++w++ CA02g29740 68 RGNITPEEQLLIMELHA----K-WSKIAKHLP-GRTDNEIKNYWRT 107 78889999999999987....5.99*******.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 7 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.921 | 10 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.04E-26 | 13 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-12 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-16 | 15 | 62 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.22E-10 | 17 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-20 | 66 | 113 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.958 | 67 | 113 | IPR017930 | Myb domain |
SMART | SM00717 | 1.9E-7 | 67 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.7E-10 | 68 | 107 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.49E-9 | 72 | 107 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 199 aa Download sequence Send to blast |
MDKRTCNSQD VEVRKGPWTM EEDLILINYI ANHGEGVWNS LARSAGLKRT GKSCRLRWLN 60 YLRPDVRRGN ITPEEQLLIM ELHAKWSKIA KHLPGRTDNE IKNYWRTRIQ KHIKQAENMN 120 RLSSDISDQH NNDQQASTSQ ASIGPPDTIE TYSGNNNNNN NIMGTNFHHQ GNFSTETNEN 180 IWSMEELWSM QLLNDATN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-21 | 15 | 113 | 7 | 108 | B-MYB |
1h8a_C | 2e-21 | 12 | 113 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KC182628 | 1e-123 | KC182628.1 Petunia x hybrida cultivar P720 EOBI (EOBI) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016561570.1 | 1e-138 | PREDICTED: myb-related protein 340-like | ||||
Swissprot | P81396 | 4e-92 | MYB40_ANTMA; Myb-related protein 340 | ||||
TrEMBL | A0A2G3ABV7 | 1e-145 | A0A2G3ABV7_CAPAN; Transcription factor MYB21 | ||||
STRING | PGSC0003DMT400001278 | 1e-114 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G27810.1 | 7e-78 | myb domain protein 21 |
Publications ? help Back to Top | |||
---|---|---|---|
|