PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g28770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | LBD | ||||||||
Protein Properties | Length: 160aa MW: 18305.8 Da PI: 8.1112 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.4 | 1.4e-39 | 11 | 112 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk++rrkC+++Cvlapyfpa+qpkkf+n+h+lFG++n++++l++l++e+ + dam+s+++e+++r + PvyG+v+ i+ l+qql+ + +el++++ CA02g28770 11 SCAACKYQRRKCTSQCVLAPYFPANQPKKFQNAHRLFGVRNIVRILEQLDDEDqKADAMKSIIFESDMREKFPVYGCVECIFYLRQQLQIALQELQYVN 109 6************************************************666649*****************************************999 PP DUF260 99 eel 101 ++l CA02g28770 110 AQL 112 875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.537 | 10 | 112 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-37 | 11 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence Send to blast |
MTVKGVTSRV SCAACKYQRR KCTSQCVLAP YFPANQPKKF QNAHRLFGVR NIVRILEQLD 60 DEDQKADAMK SIIFESDMRE KFPVYGCVEC IFYLRQQLQI ALQELQYVNA QLHIYRQQQQ 120 HSSESSVNNG RLSMLPFFSS TEAESISQGI TYSDFDVSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-27 | 11 | 115 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-27 | 11 | 115 | 11 | 114 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016558527.1 | 1e-116 | PREDICTED: LOB domain-containing protein 27-like | ||||
Swissprot | Q9STS6 | 3e-41 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | A0A1U8FGZ4 | 1e-115 | A0A1U8FGZ4_CAPAN; LOB domain-containing protein 27 | ||||
TrEMBL | A0A2G3AC52 | 1e-115 | A0A2G3AC52_CAPAN; LOB domain-containing protein 27-like | ||||
STRING | XP_009795991.1 | 5e-67 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1449 | 23 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-43 | LOB domain-containing protein 27 |
Publications ? help Back to Top | |||
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