PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g25910

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Dof

Protein Properties

Length: 288aa MW: 31045.7 Da PI: 8.9085

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g25910	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.4	7.6e-39	62	119	4	61
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++l+cprCds ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+ CA02g25910 62 ESLRCPRCDSPNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKTI 119 6789***************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.4E-33	63	118	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.385	64	118	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-26	64	117	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	66	102	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MIQELFAGNT TLIGGDNNIS KLSNITPSSS PLSCTTSNSS IAPAAAAGAT ATANASSPSN 60 VESLRCPRCD SPNTKFCYYN NYNLTQPRHF CKTCRRYWTK GGALRNVPIG GGCRKNKTIT 120 TAKSSAAKLK NSIPFEFIGK SGIFGGFEQE IIPSNNNPFL FSTPHQNHNP ILSLLRGNHH 180 NLNLVKDEQK SIEVNLHNQF PSNSLSSLWK NNDTIVGEVQ NSTGFQELYQ RLKASTSRCY 240 PDIHGPSSSS SSSMILESAP VAGGELGFWS PSFSTWTDLP TANSAYL*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	1e-127	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016561144.1	0.0	PREDICTED: dof zinc finger protein DOF4.7-like
TrEMBL	A0A1U8FZL1	0.0	A0A1U8FZL1_CAPAN; Dof zinc finger protein DOF5.3
TrEMBL	A0A2G3ABH8	0.0	A0A2G3ABH8_CAPAN; dof zinc finger protein DOF4.7-like
STRING	PGSC0003DMT400025984	1e-153	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51700.1	3e-34	DOF zinc finger protein 1