PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g22690
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 588aa    MW: 64918.9 Da    PI: 5.3529
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g22690genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS356.63.8e-1092195862373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  + L+ecA+  ++++ e+a + L rl+e +s++gdp++R+ +yf+eAL +rl++ +++   ++ +++      +e + ++k++++++P+ kf+hltaNq
  CA02g22690 219 LKSLVECARL-ADSEPENAAKSLIRLKESVSQQGDPTERVGFYFLEALYNRLSEFQEQKTPTIFCTTP-----EELTLSYKAYNDACPYSKFAHLTANQ 311
                 578******5.5668888999999******************************66666666666555.....488999******************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 aIlea+e+++r+Hi+Df+i +G+QW+a+lqaLa+R++g+p s+Ri g+ s   g   + +l +tg+rL++fA+ l+++fef++ + + +++l+ +++r+
  CA02g22690 312 AILEATEKATRIHIVDFGIVHGIQWAAFLQALATRSAGKPvSVRISGIPSVVLGnsPAAALLATGNRLRDFAKLLDLNFEFEP-ILTPVQELDGSSFRI 409
                 ************************************88777*********877788999************************.799************ PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +p+E la n++lql++lldes    +   + L+l ksl+P +v++ e e+++n+  Fl+rf +al+yys++f+sl+ +l r+s er+ vEr +lgr+i 
  CA02g22690 410 DPDEILAMNFMLQLYNLLDESNVGVK---TALNLAKSLNPSIVTLGEYEVNLNNVGFLQRFKNALKYYSTIFESLDPNLTRDSPERVQVERLILGRKIA 505
                 ******************88887777...9********************************************************************* PP

        GRAS 296 nvvac.egaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373
                  +v    g  rre +e +e+Wre +e aGFk+v+ls++a++qak ll +++ s  + + ++   ++ l Wkd+pL++vS+W
  CA02g22690 506 GAVGEdDGGTRRECMEDKEHWRELMEGAGFKAVTLSHYAMSQAKILLWNYNySSSFGLIDSAPGFLsLAWKDKPLLTVSSW 586
                 ***8625677*****************************************9999999888777766************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.56192565IPR005202Transcription factor GRAS
PfamPF035141.3E-106219586IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MAYMCTDSGN LMAIAQQVIK QKQQQEQLQQ QEQQQHQQQF LGVNPLCMNP WTTSHQSLTN  60
SPTTLGYGLT GSGFADPFQV AGGPDGGEPG FQFPNLEHHS TGFRFADFGG GPGDEFRIHY  120
PLRRSLLQLS QSTQYWLFSS SASPSAXXPP PPPPSDLIFS ETQKNLSSLQ PQTSQWVPPS  180
SSPLPVVQLP CKESKVVSVK NPVDVPCSSP ESFTSNPLLK SLVECARLAD SEPENAAKSL  240
IRLKESVSQQ GDPTERVGFY FLEALYNRLS EFQEQKTPTI FCTTPEELTL SYKAYNDACP  300
YSKFAHLTAN QAILEATEKA TRIHIVDFGI VHGIQWAAFL QALATRSAGK PVSVRISGIP  360
SVVLGNSPAA ALLATGNRLR DFAKLLDLNF EFEPILTPVQ ELDGSSFRID PDEILAMNFM  420
LQLYNLLDES NVGVKTALNL AKSLNPSIVT LGEYEVNLNN VGFLQRFKNA LKYYSTIFES  480
LDPNLTRDSP ERVQVERLIL GRKIAGAVGE DDGGTRRECM EDKEHWRELM EGAGFKAVTL  540
SHYAMSQAKI LLWNYNYSSS FGLIDSAPGF LSLAWKDKPL LTVSSWH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1462155871375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016560612.10.0PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A2G3AAC90.0A0A2G3AAC9_CAPAN; Scarecrow-like protein 4
STRINGPGSC0003DMT4000385740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA89052429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-176GRAS family protein