PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g21680
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WOX
Protein Properties Length: 284aa    MW: 32065.4 Da    PI: 6.6739
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g21680genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox634.3e-20667257
                T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                ++R+t+t++q+++L++l+++   r p+ae+++++++kl    +++ ++V++WFqN++a+e++
  CA02g21680  6 STRWTPTSDQIRILKDLYYNngVRSPTAEQIQRISAKLrqygKIEGKNVFYWFQNHKARERQ 67
                58*****************8678*************************************97 PP
2Wus_type_Homeobox1147.3e-37569265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRWtPt++Qi+iL++ly+ +G+r+P++e+iqri+a+L++yGkie+kNVfyWFQN+kaRerqk+
         CA02g21680  5 SSTRWTPTSDQIRILKDLYYnNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKK 69
                       789***************9779*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.576268IPR001356Homeobox domain
SuperFamilySSF466894.71E-11371IPR009057Homeodomain-like
SMARTSM003892.1E-6472IPR001356Homeobox domain
PfamPF000461.4E-17767IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-7767IPR009057Homeodomain-like
CDDcd000868.78E-8769No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MCRQSSTRWT PTSDQIRILK DLYYNNGVRS PTAEQIQRIS AKLRQYGKIE GKNVFYWFQN  60
HKARERQKKR LIAAASVNDN NININNTNIP GPMQMIPHLW RSVDEHKYNN TTNPGVHCPS  120
ASSHGVLTVG QTGNYGYGTL AMEKSFRDCS ISPPGGSSNE SSMNHHQNFT WVGVDPYMTC  180
PTTYPFLEKS SINKHYEEET LEEEEELQEE ENYHPGLETL PLFPMHEENM ISSLCSSSIK  240
HHESSGGGGG WYHHTNSDGY HNNNLAALEL SLNSFIGRSP NFP*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). May induce shoot stem cells activity in order to maintain the stem cell identity (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-88HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562144.10.0PREDICTED: protein WUSCHEL
SwissprotQ84VT71e-127WUS_SOLLC; Protein WUSCHEL
TrEMBLA0A1U8G2F10.0A0A1U8G2F1_CAPAN; protein WUSCHEL
STRINGPGSC0003DMT4000091571e-127(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76042331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-38WOX family protein
Publications ? help Back to Top
  1. Reinhardt D,Frenz M,Mandel T,Kuhlemeier C
    Microsurgical and laser ablation analysis of interactions between the zones and layers of the tomato shoot apical meristem.
    Development, 2003. 130(17): p. 4073-83
    [PMID:12874128]