PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g12180
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 322aa    MW: 36359.4 Da    PI: 7.2726
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g12180genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.72.4e-33168225259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK vk+s++prsYYrCts++C+vkk+vers +dp+vv++tYeg+Hnh+
  CA02g12180 168 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCQVKKRVERSYQDPSVVITTYEGQHNHH 225
                 8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-35153227IPR003657WRKY domain
SuperFamilySSF1182901.7E-29159227IPR003657WRKY domain
PROSITE profilePS5081132.443162227IPR003657WRKY domain
SMARTSM007747.7E-39167226IPR003657WRKY domain
PfamPF031066.2E-26168225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGDELRDLYY HQPFQEDSSS SVVQNIHMLD PSFMSYTNEY LYGSSSDYVN NNSLGKPFGF  60
SSSSPSPFSS SKDDMIKQDL HHVDANININ NISETPVTPN SSVSNSSSNE AAGDHDDSNK  120
KDKQVKDESL EDGEDASKKE NKGKKKGEKK QRPPKFAFMT KSEVDHLEDG YRWRKYGQKA  180
VKNSPYPRSY YRCTSQKCQV KKRVERSYQD PSVVITTYEG QHNHHLPATL RGSVARMLNP  240
SMLAQPSPLM APQAAAFHQE LIMAQMPQLF GHGNAFGSPP MYRQNLTHPL QNHQQMQLPP  300
HHDYGLLQDM VPSMFNLKQE P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-281602281078Probable WRKY transcription factor 4
2lex_A5e-281602281078Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755141e-100HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016557472.10.0PREDICTED: probable WRKY transcription factor 71
RefseqXP_016562005.10.0PREDICTED: probable WRKY transcription factor 71
TrEMBLA0A1U8FDU40.0A0A1U8FDU4_CAPAN; Putative WRKY transcription factor 71
TrEMBLA0A2G3A7L10.0A0A2G3A7L1_CAPAN; probable WRKY transcription factor 71
TrEMBLA0A2G3D4Q60.0A0A2G3D4Q6_CAPCH; Putative WRKY transcription factor 71
STRINGPGSC0003DMT4000251131e-169(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.12e-53WRKY DNA-binding protein 71