PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA02g07270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 242aa MW: 27003.5 Da PI: 9.0494 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56 | 6.7e-18 | 114 | 168 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee F+++++++ +++++LA++l++ rqV vWFqNrRa+ k CA02g07270 114 RKKLRLTKVQSALLEESFKQQSTLNPKQKQHLARRLNVRPRQVEVWFQNRRARTK 168 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 115.9 | 2.3e-37 | 114 | 202 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k q++lLEesF+++++L+p++K++lar+L+++prqv+vWFqnrRARtk+kq+E+dye+Lk+++ +l++en++L ke +eL+ + CA02g07270 114 RKKLRLTKVQSALLEESFKQQSTLNPKQKQHLARRLNVRPRQVEVWFQNRRARTKLKQTEVDYEFLKKCCATLTDENRKLYKELQELK-A 202 69*************************************************************************************9.4 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.3E-18 | 100 | 171 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-16 | 105 | 168 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.698 | 110 | 170 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.6E-14 | 112 | 174 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.09E-15 | 114 | 171 | No hit | No description |
Pfam | PF00046 | 2.4E-15 | 114 | 168 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 145 | 168 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 4.1E-9 | 170 | 204 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.3E-22 | 170 | 213 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MGSTCDDICD SAGLDLGLGF SSTSNQKSRK QGQAAAIKFD LGLNLSLPGD NQIYDLKTEN 60 KRNFPSYNKD QLSAASSYSY TSVKRERDIG SDVTEVERVI SSDCYEDDNG SNGRKKLRLT 120 KVQSALLEES FKQQSTLNPK QKQHLARRLN VRPRQVEVWF QNRRARTKLK QTEVDYEFLK 180 KCCATLTDEN RKLYKELQEL KALKIGQPLY MQLPAAAILN VCPSCERVAA AGTFTNPSAA 240 C* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 162 | 170 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016558846.1 | 1e-179 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 3e-69 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A2G3A5F6 | 1e-178 | A0A2G3A5F6_CAPAN; Homeobox-leucine zipper protein HOX27 | ||||
STRING | PGSC0003DMT400026968 | 1e-125 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37790.1 | 1e-71 | HD-ZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|