PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA02g06440

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 516aa MW: 56651.8 Da PI: 5.8741

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA02g06440	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.8	3.8e-16	49	93	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rW++eE++++++a +++G W++I +++g ++t+ q++s+ qk+ CA02g06440 49 RERWSEEEHKKFLEALRLHGRA-WRRIEEHVG-TKTAVQIRSHAQKF 93 78****************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.1E-16	43	97	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.182	44	98	IPR017930	Myb domain
TIGRFAMs	TIGR01557	2.6E-15	47	96	IPR006447	Myb domain, plants
SMART	SM00717	8.7E-13	48	96	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-8	49	89	IPR009057	Homeodomain-like
Pfam	PF00249	8.4E-14	49	92	IPR001005	SANT/Myb domain
CDD	cd00167	5.68E-10	51	94	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
DQSESDTTPP SRSRISLAVG ARIQLEEQVT PAEEYAPKIR KPYTISKQRE RWSEEEHKKF 60 LEALRLHGRA WRRIEEHVGT KTAVQIRSHA QKFFSKVVRE LNNGDASSVK SIEIPPPRPK 120 RKPMHPYPRK MATPVKSGTL APEKLKSSTS PDLCLSEPED QSPTTVLSAL GSFAFGTVHS 180 SKPSEHSSPV SSDVAENSGD VVLSEPSDII LEERRSSPAR GYASSNQDNQ SCMVHTTCTI 240 LWNCCFLVPM LMLLCMISHL TPLIVIFLFD LYIQKLDLFP EDNDFVKEGL DEASSTQCLK 300 LFGKTVLVTD SYKPSSTCGE ILLTDENDEP ASPTLPQSSV PTKYLRWGSE CPRSTLTIGL 360 PAQSYYIPAP NGSSGPNQST TSPLLPWGSS YVSDKFPCAQ VHSPIPIKGC PLFNETGLDD 420 KETQKEGSST ASNAESADVE SSGDTNLEIE AQSGNGNLVV VSVRVSVPPL FERRANFTKR 480 VEGFVPYKRC LAEGGISSST ITGEEREEQR TRLCL*

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

DQSESDTTPP SRSRISLAVG ARIQLEEQVT PAEEYAPKIR KPYTISKQRE RWSEEEHKKF  60
LEALRLHGRA WRRIEEHVGT KTAVQIRSHA QKFFSKVVRE LNNGDASSVK SIEIPPPRPK  120
RKPMHPYPRK MATPVKSGTL APEKLKSSTS PDLCLSEPED QSPTTVLSAL GSFAFGTVHS  180
SKPSEHSSPV SSDVAENSGD VVLSEPSDII LEERRSSPAR GYASSNQDNQ SCMVHTTCTI  240
LWNCCFLVPM LMLLCMISHL TPLIVIFLFD LYIQKLDLFP EDNDFVKEGL DEASSTQCLK  300
LFGKTVLVTD SYKPSSTCGE ILLTDENDEP ASPTLPQSSV PTKYLRWGSE CPRSTLTIGL  360
PAQSYYIPAP NGSSGPNQST TSPLLPWGSS YVSDKFPCAQ VHSPIPIKGC PLFNETGLDD  420
KETQKEGSST ASNAESADVE SSGDTNLEIE AQSGNGNLVV VSVRVSVPPL FERRANFTKR  480
VEGFVPYKRC LAEGGISSST ITGEEREEQR TRLCL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016557833.1	0.0	PREDICTED: protein REVEILLE 1-like
TrEMBL	A0A1U8FNA8	0.0	A0A1U8FNA8_CAPAN; protein REVEILLE 1-like
STRING	PGSC0003DMT400055263	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3185	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	2e-44	MYB_related family protein