PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g05270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GATA | ||||||||
Protein Properties | Length: 242aa MW: 26581.9 Da PI: 7.8512 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.5 | 2.5e-20 | 135 | 169 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++ CA02g05270 135 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 169 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 14.048 | 129 | 165 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.3E-19 | 129 | 181 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.51E-14 | 132 | 170 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.5E-17 | 133 | 169 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.36E-12 | 134 | 166 | No hit | No description |
Pfam | PF00320 | 5.4E-18 | 135 | 169 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 135 | 160 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MNSCGSAYCH GGPCTCGLYY GQNNDTSAYS MFYSQYHQKD ENYLENMYSF ANSSPSSSSS 60 SVDCTLSLGT PSTRLSTNEN EKRVHDTHER RSSSYMSKCW NILQNKNHTT NKSSRGSSNA 120 NTNSSGADPL VARRCANCDT TSTPLWRNGP RGPKSLCNAC GIRYKKEERR ASAAAVATAN 180 GGGMDSSQHM INGSWVHHSQ AQKMPCYSSA YGNHEFRFTE DDDRDSDSAI SFWPFLASQH 240 C* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016561845.1 | 1e-180 | PREDICTED: GATA transcription factor 19-like | ||||
TrEMBL | A0A2G3A4B1 | 1e-180 | A0A2G3A4B1_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400040074 | 1e-116 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3818 | 23 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50870.1 | 1e-36 | GATA family protein |