PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA02g04150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ARF | ||||||||
Protein Properties | Length: 695aa MW: 76029 Da PI: 8.3821 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 76.9 | 2.2e-24 | 106 | 207 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ + ++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + + ++el CA02g04150 106 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyrQ--QRPSQELVAKDLHGIEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLR--TGDGEL 200 99****************************9743..345679************************************************4..478889 PP EEEEE-S CS B3 93 vvkvfrk 99 +++v+r+ CA02g04150 201 RLGVRRA 207 9999986 PP | |||||||
2 | Auxin_resp | 118.8 | 4.3e-39 | 232 | 313 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a++a+s++++F+++YnPr s+s+F+v+++k++k+l +++s+GmRfkm++eted++e+r++G+vvgvsd+dpvrWp+SkWr+L CA02g04150 232 AVNAISSRNAFNICYNPRGSSSDFIVPYHKFSKTLAHPFSAGMRFKMRVETEDAAEQRFTGLVVGVSDVDPVRWPGSKWRCL 313 789******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.5E-40 | 100 | 211 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.02E-41 | 103 | 212 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.61E-22 | 104 | 206 | No hit | No description |
Pfam | PF02362 | 3.1E-22 | 106 | 207 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.7E-23 | 106 | 208 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.507 | 106 | 208 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.4E-34 | 232 | 313 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 695 aa Download sequence Send to blast |
MELWHACAGP LISLPKKGSA VVYLPQGHLE HLSEYPPIAC DLPPHVFCRV VDVKLQADVA 60 SDEVYAQVSL VPDNQIEQKW RDGDIDADAE EEEIEGTGKS ITPHMFCKTL TASDTSTHGG 120 FSVPRRAAED CFPPLDYRQQ RPSQELVAKD LHGIEWKFRH IYRGQPRRHL LTTGWSAFVN 180 KKKLVSGDAV LFLRTGDGEL RLGVRRAAQA KTCSSYLAPY SQLLNVSGIV DAVNAISSRN 240 AFNICYNPRG SSSDFIVPYH KFSKTLAHPF SAGMRFKMRV ETEDAAEQRF TGLVVGVSDV 300 DPVRWPGSKW RCLLVRWDDL DVSRHNRVSP WEIEPSGSGP VSSSLGMPSA KRTRVGFPIS 360 KADFPIPRDG IAVSDFGESS RFQKVLQGQE ILGMHAPYGG IDARSSRPAG IRCFPGFPSS 420 GTSRMGNSIR PLLGDNDKSH ESIGFSESLR FNKVLQGQEI FTSPPYGRAQ AGIQMQEKSR 480 TSIFVGIQVP SLGNRWSGLN LDNCTQCKRS NIVPASSPPS ALTFQHPCPP ASKFQATFNH 540 KHGKRETGNR ASLDMSENCT RYLTSGSHTE DISRKEDTQG IGSFGFLKDQ KQTGISHLSL 600 GTQSSLKGNQ NLVSMCKTSC RIFGFPLTES KISATGAETP AVAVYSHGLE TTFLPSGDGK 660 LQPGPPLMTD VVGTNFTKVN DLYAARDVLL DIAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-106 | 2 | 338 | 22 | 357 | Auxin response factor 1 |
4ldy_B | 1e-106 | 2 | 338 | 22 | 357 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00021 | PBM | Transfer from AT2G33860 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ340254 | 0.0 | DQ340254.1 Lycopersicon esculentum auxin response factor 3 (ARF3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016559787.1 | 0.0 | PREDICTED: auxin response factor 3 | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A1U8FKN5 | 0.0 | A0A1U8FKN5_CAPAN; Auxin response factor | ||||
STRING | PGSC0003DMT400081282 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6101 | 23 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-173 | ARF family protein |