PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g34700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | bHLH | ||||||||
Protein Properties | Length: 427aa MW: 48879.2 Da PI: 5.4769 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38 | 2.9e-12 | 242 | 286 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h e+Er+RR+++N++f Lr+++P K++Ka+ L Av YI++L CA01g34700 242 HVEAERKRREKLNHRFYALRSVVPYV-----SKMDKASLLADAVTYINEL 286 889**********************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 6.6E-39 | 17 | 165 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 1.85E-13 | 236 | 291 | No hit | No description |
PROSITE profile | PS50888 | 16.361 | 237 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-16 | 237 | 300 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-15 | 242 | 297 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.5E-10 | 242 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-15 | 243 | 292 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 427 aa Download sequence Send to blast |
MENLISISST SSQPNTLQKI LQYIIHNRQE CWIYAIFWQA SKDINNHLML SWGDGYFRGT 60 KDTGSAKIDH GQNVMDSEWF YMVSMPQYFV AEDDLIVQAY ASATYVWLAS YYEMQLYNCD 120 RAKEANLHGL RTIVCIATPS GVVELGSNDV IQENWEFVQF IKGLFGSNND MNTTSNLPAV 180 NQVTLEDHQK IIKDVSPQQE EDNTIKQEIT IENSDFENDD SSTINNVVNR SIKRAKKAMD 240 IHVEAERKRR EKLNHRFYAL RSVVPYVSKM DKASLLADAV TYINELKANI EDLESKLIKP 300 QNKKRHKSNN SSTTIMDQHD SHDSVSSIRT DRTNNKSLFS TRNRMEIEAK IIGSEAVIWV 360 QSLDVNYPCM RLMNAMRELE FQIYHASVSS VKDLMLQDIV IRVPEEFSNE EALKSAIATK 420 LCVIEN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-27 | 15 | 168 | 7 | 195 | Transcription factor MYC3 |
4rqw_B | 1e-27 | 15 | 168 | 7 | 195 | Transcription factor MYC3 |
4rs9_A | 1e-27 | 15 | 168 | 7 | 195 | Transcription factor MYC3 |
4yz6_A | 1e-27 | 15 | 168 | 7 | 195 | Transcription factor MYC3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 245 | 250 | ERKRRE |
2 | 246 | 251 | RKRREK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 4e-83 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016555545.1 | 0.0 | PREDICTED: transcription factor MYC3-like | ||||
TrEMBL | A0A1U8FIF6 | 0.0 | A0A1U8FIF6_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G3APD8 | 0.0 | A0A2G3APD8_CAPAN; transcription factor MYC3-like | ||||
STRING | PGSC0003DMT400015017 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1072 | 21 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 4e-65 | bHLH family protein |