PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g34630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | MYB | ||||||||
Protein Properties | Length: 278aa MW: 32286.2 Da PI: 10.2611 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.3 | 9.5e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+t Ed+ll +++k+ G g+W+ +++ g+ R++k+c++rw +yl CA01g34630 14 KGPWSTKEDLLLTNYIKENGEGQWRNLPNKAGLLRCGKSCRLRWMNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 53.9 | 4.1e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++Ed+l+++++ +lG++ W++I+ +++ gRt++++k++w+++l CA01g34630 67 RGNFSQDEDDLIIRLHSLLGNR-WSLISGRLP-GRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.956 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.98E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.3E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.21E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.116 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.08E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MGRAPCCAKE GLRKGPWSTK EDLLLTNYIK ENGEGQWRNL PNKAGLLRCG KSCRLRWMNY 60 LRPGIKRGNF SQDEDDLIIR LHSLLGNRWS LISGRLPGRT DNEIKNYWNT HLIKKLKIAG 120 IHPKVHKIFN KKEPKKKPKS DKPRKKQDKK KKNNKKKDQS LVNNNNNNDT PQVVFVPKPI 180 RLMRNYSVEM LSRPYQILKF NMHASALLKS QNNAASSSDN SEELAENNKK NINIITKDDE 240 NFLFDEFCDF SNESMVDKVY EEYLQLISEK CYDPMLM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-24 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 139 | PKKKPKS |
2 | 133 | 151 | PKKKPKSDKPRKKQDKKKK |
3 | 134 | 145 | KKKPKSDKPRKK |
4 | 134 | 151 | KKKPKSDKPRKKQDKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975447 | 1e-112 | HG975447.1 Solanum pennellii chromosome ch08, complete genome. | |||
GenBank | HG975520 | 1e-112 | HG975520.1 Solanum lycopersicum chromosome ch08, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016552469.1 | 0.0 | PREDICTED: myb-related protein 308-like | ||||
Swissprot | Q38850 | 6e-63 | MYB5_ARATH; Transcription repressor MYB5 | ||||
TrEMBL | A0A1U8F8A8 | 0.0 | A0A1U8F8A8_CAPAN; Transcription repressor MYB5 | ||||
TrEMBL | A0A2G3APA2 | 0.0 | A0A2G3APA2_CAPAN; myb-related protein 308-like | ||||
STRING | PGSC0003DMT400014983 | 1e-126 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 2e-63 | myb domain protein 7 |
Publications ? help Back to Top | |||
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