PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g33720
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 740aa    MW: 82847 Da    PI: 7.2639
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g33720genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA37.33.9e-12208237635
        GATA   6 ttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 + +TplWR+gp  ++ LCnaCG ++r kg+
  CA01g33720 208 AADTPLWRNGPPEKPILCNACGSRWRTKGT 237
                 678********66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.0E-4203249IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-8208237IPR013088Zinc finger, NHR/GATA-type
PfamPF003206.5E-10208237IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.52E-6209241No hitNo description
CDDcd002025.34E-11211251No hitNo description
PfamPF139193.5E-9477560IPR028020ASX homology domain
PfamPF165507.6E-9493566IPR032368UCH-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    Send to blast
MQGEAVYDKP LWSGYSSDPL HSGSFSAPDC AFFIDLLVVK GSVEVTGEIP LNVVLIWFFR  60
EQRLYKFDNL INLYSSVLAF VNRVTWWYPM PVGGDRSCLA GLDIVMVGSF CQILRLPLNW  120
KLSPMMILLK SHLLDIGNVF FLDIDLCGNC LCPQSSSYCP SVRMLWHAFV SVLSWLLHSR  180
CFDMLLLEPR FYRKQPLYLP SLNHQNHAAD TPLWRNGPPE KPILCNACGS RWRTKGTLAN  240
YTPLHARAEP CDSEDHRVSR FKNVSIKNKE AKVLKRKQSH DNADVGTPPD YNLGFRKVLD  300
EDISNRSSSG SAISNSESCA QFGSAEASDL TGPAQSNIWD TTVPSRKRTC FNRPKPSSVE  360
KLTKDLYTIL HEQQSSYLSA SSEEELLFEI DKPMVSVEIG HGSVLIRHPS SIGREEESEA  420
SSLSVDNKHR SVSDAYSRLT TPLVNISKGV NSPNMSTERT KKPTGPVMEQ DQIKRNKDHV  480
EKLQILGHHN SALRYIDLKD VLNYEEFTSH LSSDEQQQLL KYLPPVDSFA PPDSLRTVFE  540
SSQFEENLSS FQKLLAEGVF DNSLLGVNLE DCRTLKRLIL CYLAKSKWVQ QYNLLKDTKC  600
KNNSSGSEVT GEPSVIATCH SVNVKKPREG QHLKYSGAKA AMKSPKRVVM KSIYEQKELA  660
ASDGSCFSPR SSFTLPSENN SLMLDPFHSA NQNSDQDLLL DVPSNSCFPQ AELLVPTSSF  720
TTQASTSSSS MYPPHFVRP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-169HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755201e-169HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016551183.10.0PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H11e-132GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A2G3APK40.0A0A2G3APK4_CAPAN; GATA transcription factor 26
STRINGPGSC0003DMT4000528000.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.21e-122GATA transcription factor 26