PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g32360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | B3 | ||||||||
Protein Properties | Length: 144aa MW: 16160.7 Da PI: 8.5814 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.5 | 5.7e-14 | 23 | 104 | 4 | 88 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 +++++ l+ + l+lp +f+++ g+ + ++ +++l+ e r W+v + k++ ++ + GW++F +ngL++gD+ F+l+++ CA01g32360 23 STVKPYCLRCAALYLPTDFVKSSGLMN-RNCEMILKGEAQRCWSVWF--GKSGHHFGIIHGWEKFRAENGLQVGDVYKFELIKNG 104 567889999999********9997774.5569***************..9999999999*********************99863 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.92E-20 | 15 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-18 | 15 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.37E-15 | 19 | 113 | No hit | No description |
SMART | SM01019 | 3.1E-14 | 20 | 118 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.012 | 20 | 114 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-12 | 22 | 105 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 144 aa Download sequence Send to blast |
MSVLNAQVAT STSGDDDYPC FVSTVKPYCL RCAALYLPTD FVKSSGLMNR NCEMILKGEA 60 QRCWSVWFGK SGHHFGIIHG WEKFRAENGL QVGDVYKFEL IKNGKVPIAQ FHCKCSFSSN 120 VLLSSSSSMF RRCNLIFKQF DHL* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016555130.1 | 4e-80 | PREDICTED: B3 domain-containing protein REM7-like | ||||
TrEMBL | A0A2G3ANH4 | 3e-82 | A0A2G3ANH4_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400067664 | 1e-57 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA322 | 15 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24680.1 | 2e-15 | B3 family protein |