PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g23320 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | GRAS | ||||||||
Protein Properties | Length: 590aa MW: 67293 Da PI: 4.7921 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 303 | 7.1e-93 | 217 | 587 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalkl.fsevsPilkfs 94 lv+ Ll+++e v++++++la++l++r as +g+p+qRl +yf++AL++r++rs+ + + + ++ + s ++a++l +++ P+ ++ CA01g23320 217 LVHHLLAAVEEVNNQQFHLASKLISRCMWVASDSGTPVQRLSFYFAKALEERIHRSTGRYTCTDEDRHL---KyiktKSLGTNATSLtCHQLIPFNQVM 312 6899***************************************************44333322222222...122222222333333699********* PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192 +++a q+I+e v++++++H iDf+i G+QW+ L+qaLa++ ++ l+iT+vgs ++ke++e tg+ L++fA++lg+pf+f+++ +++++d++ e CA01g23320 313 QFAAVQTIVENVKSAKKIHLIDFNIRSGIQWIVLIQALAEKGdSPIELLKITAVGS---TEKENYEVTGNTLHSFAKSLGLPFSFDIVFVSDMKDFKKE 408 ****************************************98344559********...579************************************* PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 +++++++E++aV l + l ++ ++ +l d+++k+v+s++P+v+vv e ea+hns+sFl+rf+e+l +ysa+fd++e + r+s r+++E++++g CA01g23320 409 SINIETDETVAVYLNFILRTMIPRPDCL----DNLMKVVRSIRPTVIVVGEVEANHNSPSFLNRFIETLFFYSAFFDCFEDCMDRDSPCRTTIEEVYFG 503 ****************999999555555....55***************************************************************** PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + ++n+va+eg++r+ r+ +le Wr+ +e++G+ + +lse+ qa+l+l++++ s ++++ + l++gWk+ p+ s+S W+ CA01g23320 504 EGVRNIVAAEGEDRFTRNVKLEVWRAFFERFGMMEEELSESSWYQADLILKQFAqSSSCDLHKDGKGLIIGWKGTPIHSLSIWK 587 ******************************************************8899*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 44.035 | 191 | 566 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.4E-90 | 217 | 587 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 590 aa Download sequence Send to blast |
MANVSISNEN FSDFQDDQFH LNGYEGGVVV NGIEDPWFEH IDYVDIDSFY SMFGPNNEED 60 TSDLQVRINL LEDQQQSILD WMQNHFPTNT VMPLQPVQIQ STVEIPGNDD LQTQVPERGK 120 DSNEKPNPFS LASLELLKNY GRLSKNSSEE NLSTNALNFE ACLGNRHRLS MEEILRVAAE 180 RYIQYSTRKL DGLSRFIHPY GSALSGLCME ETRDVELVHH LLAAVEEVNN QQFHLASKLI 240 SRCMWVASDS GTPVQRLSFY FAKALEERIH RSTGRYTCTD EDRHLKYIKT KSLGTNATSL 300 TCHQLIPFNQ VMQFAAVQTI VENVKSAKKI HLIDFNIRSG IQWIVLIQAL AEKGDSPIEL 360 LKITAVGSTE KENYEVTGNT LHSFAKSLGL PFSFDIVFVS DMKDFKKESI NIETDETVAV 420 YLNFILRTMI PRPDCLDNLM KVVRSIRPTV IVVGEVEANH NSPSFLNRFI ETLFFYSAFF 480 DCFEDCMDRD SPCRTTIEEV YFGEGVRNIV AAEGEDRFTR NVKLEVWRAF FERFGMMEEE 540 LSESSWYQAD LILKQFAQSS SCDLHKDGKG LIIGWKGTPI HSLSIWKFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-45 | 235 | 587 | 21 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016540164.1 | 0.0 | PREDICTED: DELLA protein RGL1-like | ||||
TrEMBL | A0A1U8E8L3 | 0.0 | A0A1U8E8L3_CAPAN; Uncharacterized protein | ||||
TrEMBL | A0A2G3AK70 | 0.0 | A0A2G3AK70_CAPAN; DELLA protein RGL1-like | ||||
STRING | PGSC0003DMT400023345 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4694 | 18 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66350.1 | 3e-58 | RGA-like 1 |