PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g12880 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 94aa MW: 10774.5 Da PI: 11.0465 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 70.7 | 2.5e-22 | 26 | 76 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++k +grWvAeIrd + n ++r++lg+f+taeeAa a+++a+ +++g CA01g12880 26 KKYRGVRQRK-WGRWVAEIRDKK-N--NTRHWLGTFDTAEEAAVAYDKAAIEING 76 69*******9.**********53.3..4***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.70E-30 | 26 | 82 | No hit | No description |
Pfam | PF00847 | 2.3E-15 | 27 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.483 | 27 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-33 | 27 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.32E-22 | 27 | 83 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-30 | 27 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-11 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-11 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MIENGRTRVI SKKKSKEKKL LQVNMKKYRG VRQRKWGRWV AEIRDKKNNT RHWLGTFDTA 60 EEAAVAYDKA AIEINGANAL TNILEPPLKK INP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 7e-20 | 26 | 89 | 1 | 62 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 9e-20 | 26 | 89 | 4 | 65 | ATERF1 |
3gcc_A | 9e-20 | 26 | 89 | 4 | 65 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016555416.1 | 3e-50 | PREDICTED: ethylene-responsive transcription factor CRF4-like | ||||
Swissprot | O82339 | 2e-23 | CRF5_ARATH; Ethylene-responsive transcription factor CRF5 | ||||
TrEMBL | A0A2G3AHX9 | 1e-60 | A0A2G3AHX9_CAPAN; Ethylene-responsive transcription factor CRF4 | ||||
STRING | XP_009783397.1 | 1e-35 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46310.1 | 3e-16 | cytokinin response factor 5 |
Publications ? help Back to Top | |||
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