PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA01g07870

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 776aa MW: 86330.8 Da PI: 5.1173

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA01g07870	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.5	6.3e-20	33	88	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k CA01g07870 33 KKRYHRHTVRQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 88 688899***********************************************998 PP
2	START	147.5	1.2e-46	238	465	1	206
HHHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEE CS START 1 elaeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddke...qWdetlakaetle 83 ela++ ++elvk+ + +ep+W ++ g+evl +e s+ ++ea r s+vv+m++ +lv +ld+++ + + +a+t++ CA01g07870 238 ELALSSMNELVKMCTMGEPLWIWGH-NDSGKEVLNVEEYSRMfpwpvgvkqnsneLRIEATRSSAVVIMNSITLVDAFLDTNKcieLFPSIISRAKTIQ 335 578999*************9998.66677777666666667777789999**************************99999999999** PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--S CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkg 174 v++sg g lqlm++e+q+l+plv+ R+ +f+Ry++q ++g+w+ivd +ds ++ +++ +++pSg++i++++ng+s+vtwveh+++++ CA01g07870 336 VVTSGvsehasGSLQLMFMEMQVLTPLVStRECYFLRYCQQnVEEGSWAIVDFPLDSLHNNF-PAPFPYFKRRPSGCIIQDMPNGYSRVTWVEHAEVEE 433 *************************************99**********99998.58888888************************ PP SXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 175 rlphwllrslvksglaegaktwvatlqrqcek 206 + + ++++ +v sg+a+ga++w++ lqrqce+ CA01g07870 434 NPVNQIFNNFVTSGMAFGAQRWLSILQRQCER 465 ****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-20	21	91	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.04E-18	23	91	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.568	30	90	IPR001356	Homeobox domain
SMART	SM00389	6.3E-19	31	94	IPR001356	Homeobox domain
CDD	cd00086	1.89E-17	33	91	No hit	No description
Pfam	PF00046	1.9E-17	33	88	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	65	88	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	40.089	229	468	IPR002913	START domain
SuperFamily	SSF55961	7.42E-32	230	467	No hit	No description
CDD	cd08875	1.55E-109	233	464	No hit	No description
SMART	SM00234	1.1E-25	238	465	IPR002913	START domain
Pfam	PF01852	2.6E-38	238	465	IPR002913	START domain
SuperFamily	SSF55961	4.81E-17	503	661	No hit	No description
SuperFamily	SSF55961	4.81E-17	698	738	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 776 aa Download sequence Send to blast
MDSGSGSEHI EGMSGNELEL PEQQQQQQPP GKKKRYHRHT VRQIQEMEAL FKECPHPDDK 60 QRLKLSQDLG LKPRQVKFWF QNRRTQMKAQ QDRSDNVILR AENDNLKNEN YRLQAALRSV 120 MCPTCGGPAM LGEMGFDEQQ LRLENARLKE EFERVCCLVS QYNGRGPMQG LGSPPPLLPP 180 SLELDMSITN FPRKFEDQPT MPNCADMVPV SLLMPDQNNS QFSGGPMIME EEKSLAMELA 240 LSSMNELVKM CTMGEPLWIW GHNDSGKEVL NVEEYSRMFP WPVGVKQNSN ELRIEATRSS 300 AVVIMNSITL VDAFLDTNKC IELFPSIISR AKTIQVVTSG VSEHASGSLQ LMFMEMQVLT 360 PLVSTRECYF LRYCQQNVEE GSWAIVDFPL DSLHNNFPAP FPYFKRRPSG CIIQDMPNGY 420 SRVTWVEHAE VEENPVNQIF NNFVTSGMAF GAQRWLSILQ RQCERLASLM ARNISDLGVI 480 PSPEARKSLM NLSQRMIKTF CMNISTSYGQ SWTALSDSLE DTVRITTRKV TEPGQPNGLI 540 LSAVSTSWLP YNHFQVFDLL RDERRRAQLD VLSNGNSLHE VAHIANGSHP GNCISLLRIN 600 VASNSSQSVE LMLQESCTDD SGSLVAYTTV EVDAIQLAMN GEDPSCIPLL PLGFVITPVN 660 GQTNNINNSD NISSSEANSS AQSSEKRQNL SSIQEYSGGC LLTIGLQVLA STIPTAKLNL 720 SSVTAINHHL CNTVQQINAA LVAFYPESGI NAPSSPPPPR QPESSKQVDE NSNSS*

Sequence ? help Back to Top

Protein Sequence Length: 776 aa Download sequence Send to blast

MDSGSGSEHI EGMSGNELEL PEQQQQQQPP GKKKRYHRHT VRQIQEMEAL FKECPHPDDK  60
QRLKLSQDLG LKPRQVKFWF QNRRTQMKAQ QDRSDNVILR AENDNLKNEN YRLQAALRSV  120
MCPTCGGPAM LGEMGFDEQQ LRLENARLKE EFERVCCLVS QYNGRGPMQG LGSPPPLLPP  180
SLELDMSITN FPRKFEDQPT MPNCADMVPV SLLMPDQNNS QFSGGPMIME EEKSLAMELA  240
LSSMNELVKM CTMGEPLWIW GHNDSGKEVL NVEEYSRMFP WPVGVKQNSN ELRIEATRSS  300
AVVIMNSITL VDAFLDTNKC IELFPSIISR AKTIQVVTSG VSEHASGSLQ LMFMEMQVLT  360
PLVSTRECYF LRYCQQNVEE GSWAIVDFPL DSLHNNFPAP FPYFKRRPSG CIIQDMPNGY  420
SRVTWVEHAE VEENPVNQIF NNFVTSGMAF GAQRWLSILQ RQCERLASLM ARNISDLGVI  480
PSPEARKSLM NLSQRMIKTF CMNISTSYGQ SWTALSDSLE DTVRITTRKV TEPGQPNGLI  540
LSAVSTSWLP YNHFQVFDLL RDERRRAQLD VLSNGNSLHE VAHIANGSHP GNCISLLRIN  600
VASNSSQSVE LMLQESCTDD SGSLVAYTTV EVDAIQLAMN GEDPSCIPLL PLGFVITPVN  660
GQTNNINNSD NISSSEANSS AQSSEKRQNL SSIQEYSGGC LLTIGLQVLA STIPTAKLNL  720
SSVTAINHHL CNTVQQINAA LVAFYPESGI NAPSSPPPPR QPESSKQVDE NSNSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	1e-130	HG975447.1 Solanum pennellii chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016573090.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5 isoform X1
Refseq	XP_016573098.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5 isoform X1
Refseq	XP_016573102.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG5 isoform X2
Swissprot	Q336P2	0.0	ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3
TrEMBL	A0A2G3AFU7	0.0	A0A2G3AFU7_CAPAN; Homeobox-leucine zipper protein ROC3
STRING	Solyc08g076370.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9020	22	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46880.1	0.0	homeobox-7

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]