PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA01g06170
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 524aa    MW: 58471.8 Da    PI: 7.5848
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA01g06170genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA34.33.4e-11127935
        GATA  9 TplWRrgpdgnktLCnaCGlyyrkkgl 35
                TplWR+gp  ++ LCnaCG ++r kg+
  CA01g06170  1 TPLWRNGPPEKPILCNACGSRWRTKGT 27
                9*******66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003206.1E-9127IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-7127IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.31E-11140No hitNo description
SMARTSM004010.0064141IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-5131No hitNo description
PfamPF139199.3E-11270353IPR028020ASX homology domain
PfamPF165505.6E-10285361IPR032368UCH-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
TPLWRNGPPE KPILCNACGS RWRTKGTLVN YTPLHARAEP DDLEDHRVSR FKTFPVKNKE  60
VKILKRKKNQ DNPEIGIIPE YNQGFHRKAL DEDTSNRSSS GSAVSNTESC GQFGSAEASD  120
LTGPAQSNIW DATVPSRKRT CVNRPKQSSI EKLTKDLYTI LHEQQSSYFS GSSEEDLLFE  180
SDKPMVSVEI GHGSVLIRHP SSIGREEESE ASSLSVDNKQ LSSNEAYSQL TTPPVNIIKG  240
VNSSYLVTQR AKKPPGQGLE HDQIKRNKDH LEKLQILGHH NSPLCHIDLK DVLNYEEFTK  300
LLTSDEQQQL LKYLPPVDSS SPPESLKCMF ESSQFEENLS SFQKLLAVGV FDNSLPGMTV  360
EECRTLKRFM LCYLMKSKWV EQFKLIKDMK CKNSSSSSEV AGGRNVIGSA HSVNMKRPRE  420
GQHPKYLGVN TTMKSPKRVA MKNSYEQKEM IDNDGSCFSP KSLFALPSEN SFLFTNDSPD  480
QDLLLHVPSN SSFPQAELFL PTASFAAQAS TSSSSIYPHH VQP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016570555.10.0PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H11e-136GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A2G3AF710.0A0A2G3AF71_CAPAN; GATA transcription factor 26
STRINGPGSC0003DMT4000675060.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.21e-140GATA transcription factor 26