PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA01g05310 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 90aa MW: 10023.2 Da PI: 8.4852 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.4 | 6.5e-12 | 2 | 48 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ie+k +v fskR++g+ KA+E S L++a+v i+f + gk + y CA01g05310 2 IESKEACTVAFSKRKKGLDEKAKEYSNLTGADVGFILFTQAGKPHSY 48 8999**************************************98888 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.068 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.6E-4 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-17 | 2 | 76 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.4E-15 | 2 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-5 | 14 | 29 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.4E-5 | 29 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 90 aa Download sequence Send to blast |
LIESKEACTV AFSKRKKGLD EKAKEYSNLT GADVGFILFT QAGKPHSYGS PSIEKVIDKF 60 HELKQNDSQQ NHTNMSKTNA FEAFEDLRK* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016566538.1 | 2e-54 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A2G3AER9 | 3e-59 | A0A2G3AER9_CAPAN; Uncharacterized protein (Fragment) | ||||
STRING | PGSC0003DMT400086554 | 1e-25 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14083 | 7 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-14 | AGAMOUS-like 61 |