PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA01g02000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 248aa MW: 27372.5 Da PI: 4.9671 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.7 | 4.4e-05 | 94 | 116 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++Cg+ Fs L H+r+H CA01g02000 94 YKCSICGEEFSLGQALGGHMRKH 116 9*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.19E-9 | 47 | 116 | No hit | No description |
Pfam | PF13912 | 3.0E-9 | 48 | 71 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.783 | 48 | 75 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.41 | 48 | 70 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 50 | 70 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.4E-5 | 92 | 119 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 7.2E-10 | 94 | 119 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.281 | 94 | 121 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.014 | 94 | 116 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 96 | 116 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MSTPSTTTDM TLTLKRSITE EESVEKFAMA NCVDIMKRNE LSGRHELFKC KTCEKQFDSF 60 QALGGHRTSH KNKKNKLMAT STNNDSLPVK PKKYKCSICG EEFSLGQALG GHMRKHRDEL 120 NQSKQNKIKK FEESESGECA LKEESESGEC ALEESSKSGE CALKEESESG ECALEESSKS 180 VECALEESSK SGECALKEGS KSGECAEAFH DKEDLGDTKR TLFLDLNYTP YENELMTGVS 240 PFSFGCN* |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016552714.1 | 1e-178 | PREDICTED: zinc finger protein 525-like | ||||
TrEMBL | A0A1U8F900 | 1e-176 | A0A1U8F900_CAPAN; zinc finger protein 525-like | ||||
STRING | PGSC0003DMT400021456 | 2e-51 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 2e-25 | C2H2 family protein |