PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA01g00280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 435aa MW: 49072.4 Da PI: 7.1778 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.3 | 2.5e-12 | 258 | 304 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h e+Er RR+++N++f Lr+++P+ K++Ka+ L Av YI++L CA01g00280 258 KNHVEAERLRREKLNHRFYALRSVVPNV-----SKMDKASLLADAVTYINEL 304 589************************6.....5***************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.7E-35 | 21 | 172 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.52 | 255 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.66E-14 | 258 | 309 | No hit | No description |
Pfam | PF00010 | 6.4E-10 | 258 | 304 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-17 | 259 | 321 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-17 | 259 | 320 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-15 | 261 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 435 aa Download sequence Send to blast |
MMQEITSTSS STTSPALLNT LQKRLQYIIH TLQEWWVYAI FWQASKDANG RLIFSWEDGH 60 FRGTKDLAMA EVRITNADNN VGDPEMFYAV SATNCFVSED DLITHTYNSG FYIWLNNYYE 120 SQLYNYDRAK EAHLHGIRTL VCISTPHGVV ELGSSEVIQE NLELIQLNRS LFGLSNKNSP 180 SQTNHQGLSS FNFVPLGSHH IQKVDTNNNP EIYIGNKSSD SGNSDYDNES SAMYNINSPK 240 KRGRKSSSST KTERIMAKNH VEAERLRREK LNHRFYALRS VVPNVSKMDK ASLLADAVTY 300 INELKAKVEE LETSKSECQK PKRNYVDTVM EMYGSRNNIN SSFGWCNSTG AYGIEVEVKI 360 IGVEAMVRVR SPNVSYPCAR LMNVLRELEL QIHHASVASV KDMMIQDVVI GIPRNLTNEE 420 ALKSVILTKL SVIS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 1e-22 | 259 | 315 | 8 | 64 | Transcription factor MYC2 |
5gnj_B | 1e-22 | 259 | 315 | 8 | 64 | Transcription factor MYC2 |
5gnj_E | 1e-22 | 259 | 315 | 8 | 64 | Transcription factor MYC2 |
5gnj_F | 1e-22 | 259 | 315 | 8 | 64 | Transcription factor MYC2 |
5gnj_G | 1e-22 | 259 | 315 | 8 | 64 | Transcription factor MYC2 |
5gnj_I | 1e-22 | 259 | 315 | 8 | 64 | Transcription factor MYC2 |
5gnj_M | 1e-22 | 259 | 315 | 8 | 64 | Transcription factor MYC2 |
5gnj_N | 1e-22 | 259 | 315 | 8 | 64 | Transcription factor MYC2 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016552541.1 | 0.0 | PREDICTED: transcription factor bHLH14-like | ||||
TrEMBL | A0A2G3AD80 | 0.0 | A0A2G3AD80_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400031899 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1072 | 21 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00870.1 | 2e-65 | bHLH family protein |