PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g96300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | Dof | ||||||||
Protein Properties | Length: 216aa MW: 24011.4 Da PI: 7.1235 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 118.8 | 2e-37 | 15 | 70 | 6 | 61 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC stntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvP+Ggg+rk+++ CA00g96300 15 PACPRCGSTNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPIGGGCRKSRRG 70 57**************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 3.0E-21 | 7 | 60 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.556 | 15 | 69 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.9E-32 | 16 | 69 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 17 | 53 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MERGTIWKSN VELAPACPRC GSTNTKFCYY NNYSLTQPRY FCKGCRRYWT KGGSLRNVPI 60 GGGCRKSRRG KSSSNIIHNH HHHELISRNL GHGVCLNPTN IDHHNQSTSS SLDHHHGPSI 120 DLALVYSNFL NSTNSKSSQP EDRQNPELPD DLLLPDQGVL VTPSFELSSM IDMEFVNSEL 180 GQESRLLGAG AGDGVDFYFS GIHEEKQNXG MSQDW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC245817 | 1e-159 | AC245817.9 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-126l2 map 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016561878.1 | 1e-151 | PREDICTED: dof zinc finger protein DOF3.5-like | ||||
Swissprot | Q9SVC5 | 3e-42 | DOF35_ARATH; Dof zinc finger protein DOF3.5 | ||||
TrEMBL | A0A2G2YK84 | 1e-153 | A0A2G2YK84_CAPAN; Dof zinc finger protein DOF3.7 | ||||
STRING | PGSC0003DMT400055052 | 2e-97 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12963 | 13 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 8e-34 | Dof family protein |