PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g87020
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 373aa    MW: 41193.1 Da    PI: 6.0118
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g87020genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.12.2e-17260293134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 C +C  tkTp+WR gp g+k+LCnaCG++y+k +
  CA00g87020 260 CLHCEITKTPQWRAGPMGPKSLCNACGVRYKKGR 293
                 99******************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.3E-17254304IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.53254290IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.6E-14258293IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577167.13E-15258318No hitNo description
CDDcd002021.59E-12259306No hitNo description
PfamPF003202.2E-15260294IPR000679Zinc finger, GATA-type
PROSITE patternPS003440260285IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MGSNFGDEID CSSFFDHMED LIEFSPENEC GGLDAVDCKD FPSWNDECAG LDAVGCKDFQ  60
NIWNDPLPDT DPLFSGSYSN SASDFSAELS VPYEDIAHLE WLSTFVEDSF SCEGLTLGKE  120
HCRVDKEPSD SKFLTSSPVS VLESSSSSSS SSSSSSSGPG KTIPPLSPCH RGPQRARSKR  180
PRPTTFNPRP VNQLMFPTSL LPQQFVVPPG VHSLESESFA EESSPMKKKK KKRIKFSIPR  240
PPIETLHDDH NPEPQEVRKC LHCEITKTPQ WRAGPMGPKS LCNACGVRYK KGRLYPEYRP  300
AASPTFVPSL HSNSHKKVME MRTSVFPDDT QYYYKPPKPS RARPLTIGQA ENTTTTTTTA  360
STLTAQLDVK PE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178182KRPRP
2226232KKKKKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571989.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLA0A2G2XUV90.0A0A2G2XUV9_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000701341e-178(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-37GATA family protein