PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g86410
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 591aa    MW: 66108.3 Da    PI: 4.5021
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g86410genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.52.6e-53101371128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 ++pGfrFhPtdeelv++yLk+kv gk+l++ ++i+e+diykvePwdLp  +++k+++ ewyfFs  d+k+ +g ++nrat++gyWk+tgkd++v++ k+
  CA00g86410  10 MAPGFRFHPTDEELVSYYLKRKVCGKPLRF-DAISEIDIYKVEPWDLPgmSRLKTRDLEWYFFSMLDRKHGNGAKTNRATERGYWKTTGKDRAVHH-KS 106
                 579*************************99.99***************6347788888**************************************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 ++vg+kktLvf++grapkg++t+Wvmhey+l
  CA00g86410 107 KVVGMKKTLVFHSGRAPKGQRTNWVMHEYKL 137
                 9****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.16E-5610147IPR003441NAC domain
PROSITE profilePS5100555.17410199IPR003441NAC domain
PfamPF023653.6E-2812137IPR003441NAC domain
SuperFamilySSF1019411.16E-56187199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MEPKGLRKLM APGFRFHPTD EELVSYYLKR KVCGKPLRFD AISEIDIYKV EPWDLPGMSR  60
LKTRDLEWYF FSMLDRKHGN GAKTNRATER GYWKTTGKDR AVHHKSKVVG MKKTLVFHSG  120
RAPKGQRTNW VMHEYKLIDE ELVKAGIVQV RLYEHVVVQV RLYERVVVLA QCNGFLCLST  180
PLLNPVLQDA LVLCRVFQKS GAGPKNGDKY GAPYVEEEWE DDELEVVPKE EAAEEVEFGD  240
DIYLDGHDLD QILGTDTPVD GAPLPLNCYF EENASNSGET SNSFEEAQNW IQQPDEQESF  300
DPAIQQNANA NPVKHEFMSE PSNSVNAVDA DYLLDEPIVT ATENLQFNDG AFLEASDLSR  360
PIEVDTSSFD MLEEYLTFFD ADDDFRSMDF NPAMMIGGDD HVSDLASLEE KNIGEVTDQP  420
IPPSDEPEDQ KNSVASSSKL EPSKFGSDCK YPFMKKASCM LGGIPAPPAF ASEFPSKNAA  480
FRMNSSSEAS SSIHVTGLIQ ITNMTMSGNA ADGLLGKHGN YNVTLSFSLS QHGDISAPLE  540
SFVSVLPGKT TSTMSWYWFY YLFLWVLILS TSFKIGTLIR AMYGFRNIES *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-431013715140Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-172HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016573812.10.0PREDICTED: NAC domain-containing protein 78
TrEMBLA0A2G2XV320.0A0A2G2XV32_CAPAN; NAC domain-containing protein 13
STRINGPGSC0003DMT4000600900.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31412450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-121NAC domain containing protein 2