PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g84150
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Dof
Protein Properties Length: 276aa    MW: 31061.8 Da    PI: 4.1924
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g84150genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.23.6e-382180362
      zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                e+a +cprC stntkfCyynnyslsqPryfCkaCrryWtkGG+lrnvPvGgg+rk+++s+
  CA00g84150 21 EQAPNCPRCASTNTKFCYYNNYSLSQPRYFCKACRRYWTKGGSLRNVPVGGGCRKSRRSR 80
                67789***************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-27873IPR003851Zinc finger, Dof-type
PfamPF027011.5E-322278IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.6862478IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102662IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MLPYHSRPMI MMERTRKSNI EQAPNCPRCA STNTKFCYYN NYSLSQPRYF CKACRRYWTK  60
GGSLRNVPVG GGCRKSRRSR SSRKDDNTLQ SPSPAFETPG ANIDLADVFA KYLNQGTAND  120
HDDDDQDNNI ILQESQDYSS IGASLSESPS SDSLVNNPTS FENESLFDET IMASFQDYPC  180
GNFLQEEQGG PIDQVGNQDF LDFNTSFLEM QAMLGDEIIG QGEEFDHYNT SNFSWQSMMQ  240
FQDFGSILEL DDQLKNSTSN LASDNNNYSS FDLSN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-144HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755161e-144HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016571615.10.0PREDICTED: dof zinc finger protein DOF3.5
TrEMBLA0A2G2XV690.0A0A2G2XV69_CAPAN; Dof zinc finger protein DOF1.2
TrEMBLA0A2G3CMS80.0A0A2G3CMS8_CAPCH; Dof zinc finger protein DOF1.2
STRINGPGSC0003DMT4000020601e-149(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21340.18e-37Dof family protein