PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g84110
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 445aa    MW: 51061.5 Da    PI: 5.3951
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g84110genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS32.61e-10148202155
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 
                 lve Ll+ Ae vs+++  +a+++L++  + +s++g+p++Rla yf +AL+ r+ r
  CA00g84110 148 LVENLLASAEKVSQKQYDRARRILNECDKFCSNTGNPVHRLAYYFSQALRDRIDR 202
                 5789*************************************************98 PP
2GRAS166.22.7e-51242442171374
        GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                 +l++pf+fn+++++++ +l+ e+++++ +Ea+a+   + l+r+l+++++l+s    +++++++++P+ ++v+e ea+hns+ F++rf+eal +y a+fd
  CA00g84110 242 SLNLPFSFNIVMVEDVMKLKQEDFEIDDEEAIAIFARYILMRMLAQPAKLDS----LMRVIRGINPRAMIVIEVEANHNSPAFVDRFVEALFFYGAFFD 336
                 79******************************************99999999....******************************************* PP

        GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpL 367
                 sle  +  ++++r+ +E e l+r i+++va+eg+er+ rh ++  Wr+ + + G+++++ls +   qa+l+l++++ +   ++e ++++l++gWk+ pL
  CA00g84110 337 SLEDCMRYDERNRTAIESEHLSRGIRSIVATEGEERTIRHVKVDVWRAFFARYGMEEMELSMSSLYQANLVLKNFAcGSCCTLEMNKNCLLIGWKGTPL 435
                 ****************************************************************************9999******************* PP

        GRAS 368 vsvSaWr 374
                 +s+SaW+
  CA00g84110 436 ISLSAWK 442
                 ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035143.6E-8148202IPR005202Transcription factor GRAS
PfamPF035149.3E-49242442IPR005202Transcription factor GRAS
PROSITE profilePS5098518.377242421IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MFHFDQSELN SSESNEMNLD YDFVSLDKWD FNVIPLQHQS NVDETKKISG SKLPSAFKIL  60
KEYDTIRFKR SKTDKKIITN SECIKLSVTD KKIITNSECI KLSVDEILRL GAEKFIQSCT  120
IHGDREAYML FASSFLGLSE DDTRNVALVE NLLASAEKVS QKQYDRARRI LNECDKFCSN  180
TGNPVHRLAY YFSQALRDRI DRDAGRDSSK DIGMNLLVPM EHLLMNLFYD CSTSEHTFVT  240
VSLNLPFSFN IVMVEDVMKL KQEDFEIDDE EAIAIFARYI LMRMLAQPAK LDSLMRVIRG  300
INPRAMIVIE VEANHNSPAF VDRFVEALFF YGAFFDSLED CMRYDERNRT AIESEHLSRG  360
IRSIVATEGE ERTIRHVKVD VWRAFFARYG MEEMELSMSS LYQANLVLKN FACGSCCTLE  420
MNKNCLLIGW KGTPLISLSA WKLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-18243441186378Protein SCARECROW
5b3h_A6e-18243441185377Protein SCARECROW
5b3h_D6e-18243441185377Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016556062.11e-153PREDICTED: DELLA protein RGL2-like
TrEMBLA0A2G2ZJT40.0A0A2G2ZJT4_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000698451e-128(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1904823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-34RGA-like 2