PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g84090
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 495aa    MW: 57429.3 Da    PI: 5.5379
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g84090genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS32.41.2e-10148202155
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 
                 lve Ll+ Ae vs+++  +a+++L++  + +s++g+p++Rla yf +AL+ r+ r
  CA00g84090 148 LVENLLASAEKVSQKQYDRARRILNECDKFCSNTGNPVHRLAYYFSQALRDRIDR 202
                 5789*************************************************98 PP
2GRAS118.21e-36241391120273
        GRAS 120 sqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll 214
                 + G+QW  L+qaL + +    ++  +lRiT++     + ++++e t+erL +fA +l++pf+fn+++++++ +l+ e+++++ +Ea+a+   + l+r+l
  CA00g84090 241 GCGMQWTILMQALYTHQcgceSSLKHLRITALCT---KLRHKIEDTRERLMDFAMSLNLPFSFNIVMVEDVMKLKQEDFEIDDEEAIAIFARYILMRML 336
                 579***********99988877788*******99...57999********************************************************* PP

        GRAS 215 desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                  ++++l+s    +++++++++P+ ++v+e ea+hn++ F++rf+eal +y a+fdsle 
  CA00g84090 337 VQPAKLDS----LMRVIRGINPRAMIVIEVEANHNTPAFVDRFVEALFFYGAFFDSLED 391
                 88888888....*********************************************86 PP
3GRAS66.84.4e-21393487251345
        GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                 + F++rf+eal +y a+fdsle  +  ++++r+ +E e l+r i+++va+eg+er+ rh ++  Wr+ + + G+++++ls +   qa+l+l+++ 
  CA00g84090 393 PAFVDRFVEALFFYGAFFDSLEDCMRYDERNRTAIESEHLSRGIRSIVATEGEERTIRHVKVDVWRAFFARYGMEEMELSMSSLYQANLVLKNFX 487
                 67*****************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098526.04122494IPR005202Transcription factor GRAS
PfamPF035144.3E-8148202IPR005202Transcription factor GRAS
PfamPF035143.4E-34241391IPR005202Transcription factor GRAS
PfamPF035141.5E-18393487IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MFHFDQSELN SSESNEMNLD YDFVSLDKWD FNVIPLQHQS NVDETKKISG SKLPSAFKIL  60
KEYDTIRFKR SKTDKKIITN SECIKLSVTD KKIITNSECI KLSVDEILRL GAEKFIQSCT  120
IHGDREAYML FASSFLGLSE DDTRNVALVE NLLASAEKVS QKQYDRARRI LNECDKFCSN  180
TGNPVHRLAY YFSQALRDRI DRDAGRDSSK DIGMNLLVPM EHLLMNLFYD CSTSEHTFVT  240
GCGMQWTILM QALYTHQCGC ESSLKHLRIT ALCTKLRHKI EDTRERLMDF AMSLNLPFSF  300
NIVMVEDVMK LKQEDFEIDD EEAIAIFARY ILMRMLVQPA KLDSLMRVIR GINPRAMIVI  360
EVEANHNTPA FVDRFVEALF FYGAFFDSLE DXPAFVDRFV EALFFYGAFF DSLEDCMRYD  420
ERNRTAIESE HLSRGIRSIV ATEGEERTIR HVKVDVWRAF FARYGMEEME LSMSSLYQAN  480
LVLKNFXMVW RKWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2115648627349Protein SCARECROW
5b3h_A2e-2115648626348Protein SCARECROW
5b3h_D2e-2115648626348Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016556062.10.0PREDICTED: DELLA protein RGL2-like
TrEMBLA0A2G2ZJL30.0A0A2G2ZJL3_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000698450.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1904823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-29RGA-like 1