PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g69000
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 303aa    MW: 31937.1 Da    PI: 5.4192
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g69000genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.41.4e-09149193554
                 HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                 h+++Er RR+ri +++  L+el+P+ +      K + a +L + v+Y+k L
  CA00g69000 149 HSIAERLRRERIAERIRALQELVPSvN------KTDRAVMLDEIVDYVKFL 193
                 99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-15142203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.044144193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14146203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-7149193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MANNPSEGPS DDFFEQILGF PAYNGAEPNL AGNDPGAIPP AMMLQLNSGD GSGQFSGVGL  60
GVGVGLGGLG GGGSFPLGLS LEQGKGGGGF LKMDDVSAPG RRFRDDVVDS RPSSSVKPGF  120
HGQPMPSMPH PPAIRPRVRA RRGQATDPHS IAERLRRERI AERIRALQEL VPSVNKTDRA  180
VMLDEIVDYV KFLRLQVKVL SMSRLGGAGA VAPLVTDIPI SSSVEEESSE GGTNNQPAWE  240
KWSSDGTERQ VAKLMEENVG AAMQFLQSKA LCIMPISLAS AIYHSQPPDT SSLVKPETNP  300
PS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153158RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-109HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016565444.10.0PREDICTED: transcription factor UNE12 isoform X1
RefseqXP_016565445.10.0PREDICTED: transcription factor UNE12 isoform X1
RefseqXP_016565446.10.0PREDICTED: transcription factor UNE12 isoform X1
SwissprotO227681e-125UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A2G2ZXU10.0A0A2G2ZXU1_CAPAN; Transcription factor UNE12
STRINGSolyc09g065820.2.11e-175(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57992434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.31e-80bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]