PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g64680
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 606aa    MW: 67357.8 Da    PI: 7.3436
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g64680genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12434480455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  CA00g64680 434 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 480
                 799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.2E-5648236IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.85430479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-18433492IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.51E-14433484No hitNo description
PfamPF000103.4E-10434480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-17434491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-16436485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MVTGNMCWSD EDKANVAAVL GKDAFEYLMS GSVSAECSLM AIGNDQNLQN KLSDLVERPN  60
PTNFSWNYAI FWQISRSKSG ELVLGWGDGC CREPREGEER EVRRIFNLRL DDEAQQRMRK  120
RVLQKLHLLF GGTDEDNYAL GLDRVTDTEM FFLASMYFSF PRGEGGPGKC FGSGKHLWLS  180
DALTSNLDYC ARSFLAKSAG MQTIVLIPTD VGVVELGSVR SIPESLELLH NIKSCFSSFL  240
SLVRAKQATG IAVVPEKKEG NNPHFSNSIA VTERPDGNPK IFGHDLNSGT HFREKLAVRK  300
AEERPWDMYQ NGNRMPFVNA RNGLHAASWA QFSNVKPGKP VEFYGPQTPA HNLVNGGRED  360
LRLNNFQHQN SAARMQIDFS GATSRPIVSS AQTIESEHSD VEASCKEDRA GLADEKRPRK  420
RGRKPANGRE EPLNHVEAER QRREKLNQRF YALRAVVPNI SKMDKASLLG DAIAYITELQ  480
KRLRDMESER ELRLGSTSRD GMASEDSPSS EIQIRGPDIN IEAANDEVIV RVSCPLESHP  540
ISRVIQTFKE AKINVVDSKL SAGNGTVYHT FVLKSSGSEQ LTKEKLLAAF SSESNSQRQL  600
SPVGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-28428490264Transcription factor MYC2
5gnj_B1e-28428490264Transcription factor MYC2
5gnj_E1e-28428490264Transcription factor MYC2
5gnj_F1e-28428490264Transcription factor MYC2
5gnj_G1e-28428490264Transcription factor MYC2
5gnj_I1e-28428490264Transcription factor MYC2
5gnj_M1e-28428490264Transcription factor MYC2
5gnj_N1e-28428490264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1415423KRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016538211.10.0PREDICTED: transcription factor bHLH13
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A1U8DVM90.0A0A1U8DVM9_CAPAN; Transcription factor bHLH13
TrEMBLA0A2G2YYA90.0A0A2G2YYA9_CAPAN; transcription factor bHLH13
STRINGSolyc01g096050.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35852348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.30.0bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]