PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g61570
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 277aa    MW: 31853.5 Da    PI: 4.4514
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g61570genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.68e-152267148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+ T +E+ +++++ + +G++ W++I+++++ gRt++++k++w+++l
       CA00g61570 22 RGNITSDEEAIIIKLRATFGNR-WSLISEHLP-GRTDNEIKNYWNSHL 67
                     7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.135116IPR017877Myb-like domain
SuperFamilySSF466895.43E-20376IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-10329IPR009057Homeodomain-like
PROSITE profilePS5129422.6181771IPR017930Myb domain
SMARTSM007172.1E-152169IPR001005SANT/Myb domain
PfamPF002492.8E-132267IPR001005SANT/Myb domain
CDDcd001676.56E-102667No hitNo description
Gene3DG3DSA:1.10.10.601.3E-193067IPR009057Homeodomain-like
PROSITE patternPS002320241251IPR020894Cadherin conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007155Biological Processcell adhesion
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
LLRCGKSCRL RWINYLKTDL KRGNITSDEE AIIIKLRATF GNRWSLISEH LPGRTDNEIK  60
NYWNSHLSRK VESLRIPSDE KLPQAVVELA KKGKQKQFIK QRCKRKTNAS VLNSTSETAV  120
PITPRLNIEK ETPNTIGNGH NNAMELDRND HQMLWHDDIV LMDDKDAEID EDFIFNCLWN  180
DEGENLELVE KNNNNNNEIF GEDSYGTLNC WDWEYLGEIL NNETLASTQE AGQENNDMSS  240
VSIFDMNDNM PNCMNEEATV ENIDLMQSDL VNWLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-1737340110B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016553791.10.0PREDICTED: transcription repressor MYB6-like
TrEMBLA0A1U8F5820.0A0A1U8F582_CAPAN; Transcription factor MYB12
TrEMBLA0A2G3AFF40.0A0A2G3AFF4_CAPAN; transcription repressor MYB6-like
STRINGPGSC0003DMT4000188411e-121(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.13e-38myb domain protein 111