PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA00g60620
Organism
Capsicum annuum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 145aa    MW: 15716.9 Da    PI: 5.2079
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA00g60620genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA32.41.2e-103259835
        GATA  8 kTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 TplWR gp +++ LCnaCG ++  kg+
  CA00g60620 32 GTPLWRPGPPKKPVLCNACGSRWWTKGT 59
                5********99999*********88876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.109.5E-83259IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.09E-63263No hitNo description
PfamPF003202.5E-83259IPR000679Zinc finger, GATA-type
CDDcd002021.24E-83359No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MGIKNRLWTD PTRSDVLLGL PTVGVGGSLV EGTPLWRPGP PKKPVLCNAC GSRWWTKGTL  60
DDYVPKHGNR KTQSNQLPSE MKTHLLAHED QKLEVGLEVS GQEDSLASLE EEMNNISSLG  120
SAGLPSDNCM QMEETNGKII FTCI*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581945.13e-89PREDICTED: GATA transcription factor 26-like
TrEMBLA0A2G2XXT13e-88A0A2G2XXT1_CAPAN; Uncharacterized protein
STRINGPGSC0003DMT4000944309e-48(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125821014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.22e-16GATA transcription factor 26