PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g57460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 188aa MW: 21480.5 Da PI: 10.117 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.8 | 4.3e-19 | 64 | 118 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk+q Lee F++n++++ +e+e LA++l+L +rqV vWFqNrRa+ k CA00g57460 64 RKKLRLTKQQSFLLEESFRQNHTLNPKEKEALAMQLKLRTRQVEVWFQNRRARSK 118 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 111.1 | 7.3e-36 | 64 | 152 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+k+q+ lLEesF+++++L+p++K++la +L+l++rqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL+keveeLr+ CA00g57460 64 RKKLRLTKQQSFLLEESFRQNHTLNPKEKEALAMQLKLRTRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLKKEVEELRA 152 69*************************************************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-17 | 47 | 118 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.36E-19 | 47 | 121 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.827 | 60 | 120 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.1E-17 | 62 | 124 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.21E-14 | 63 | 121 | No hit | No description |
Pfam | PF00046 | 1.9E-16 | 64 | 118 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 2.9E-10 | 120 | 154 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.4E-18 | 120 | 163 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MPENSTCLEL TISIPGSSSN SSSFPSPGGG GYNMMRELDI NLVPSIQVSN NNNNNNNNNG 60 VPPRKKLRLT KQQSFLLEES FRQNHTLNPK EKEALAMQLK LRTRQVEVWF QNRRARSKLK 120 QTEMECEYLK RWFGSLTEQN RRLKKEVEEL RAMKVGVLSP HTCPSTLTMC PHCERVTTTT 180 IRDESRI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 120 | RRARSKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC238741 | 9e-33 | AC238741.2 Solanum lycopersicum chromosome 05 clone C05HBa0078I05, complete sequence. | |||
GenBank | HG975444 | 9e-33 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. | |||
GenBank | HG975517 | 9e-33 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016546780.1 | 1e-106 | PREDICTED: homeobox-leucine zipper protein ATHB-17 | ||||
Swissprot | Q8S9N6 | 2e-72 | ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17 | ||||
TrEMBL | A0A2G2YBT4 | 1e-135 | A0A2G2YBT4_CAPAN; Homeobox-leucine zipper protein HOX3 | ||||
STRING | XP_009802790.1 | 1e-84 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 9e-64 | homeobox-leucine zipper protein 17 |
Publications ? help Back to Top | |||
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