PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g54690

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NAC

Protein Properties

Length: 249aa MW: 28339.1 Da PI: 10.1192

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g54690	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161	4.7e-50	14	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...k 96 lppGfrF+Ptdeelvv+yLk+kv + +l++ ++i+ev++yk++PwdLp e+e yfFs+++ ky++g+r+nrat+sgyWkatg dk+++ k + CA00g54690 14 LPPGFRFRPTDEELVVQYLKRKVFSFPLPA-SIIPEVEVYKSDPWDLPGD---MEQEKYFFSTKEVKYPNGNRSNRATTSGYWKATGIDKQIVMKgqqQ 108 79**************************.89***********54...46799*******************************996655 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++lvglkktLvfy+g++p+g +t+W+mheyrl CA00g54690 109 QQLVGLKKTLVFYRGKSPHGCRTNWIMHEYRL 140 666*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-57	10	162	IPR003441	NAC domain
PROSITE profile	PS51005	56.884	14	162	IPR003441	NAC domain
Pfam	PF02365	2.3E-26	15	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009737	Biological Process	response to abscisic acid
GO:0010089	Biological Process	xylem development
GO:0010150	Biological Process	leaf senescence
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MEKVDFVKNG VLRLPPGFRF RPTDEELVVQ YLKRKVFSFP LPASIIPEVE VYKSDPWDLP 60 GDMEQEKYFF STKEVKYPNG NRSNRATTSG YWKATGIDKQ IVMKGQQQQQ LVGLKKTLVF 120 YRGKSPHGCR TNWIMHEYRL ANFQSNNHPT QGNWVICRIF LKKRGTTKNE EENARNIGGA 180 VACIAEKKKK KNALVFYDFM GRDNMNGTAA TTTSSSSTTS SGITDLTTNN EESDESSCTF 240 NTSFRRKR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-53	12	168	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-53	12	168	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-53	12	168	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-53	12	168	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	9e-53	12	168	18	174	NAC domain-containing protein 19
3swm_B	9e-53	12	168	18	174	NAC domain-containing protein 19
3swm_C	9e-53	12	168	18	174	NAC domain-containing protein 19
3swm_D	9e-53	12	168	18	174	NAC domain-containing protein 19
3swp_A	9e-53	12	168	18	174	NAC domain-containing protein 19
3swp_B	9e-53	12	168	18	174	NAC domain-containing protein 19
3swp_C	9e-53	12	168	18	174	NAC domain-containing protein 19
3swp_D	9e-53	12	168	18	174	NAC domain-containing protein 19
4dul_A	9e-53	12	168	15	171	NAC domain-containing protein 19
4dul_B	9e-53	12	168	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269\|PubMed:20388856, ECO:0000269\|PubMed:21673078, ECO:0000269\|PubMed:24442717}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00507	DAP	Transfer from AT5G13180	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269\|PubMed:21673078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016579124.1	0.0	PREDICTED: NAC domain-containing protein 83
Swissprot	Q9FY93	8e-86	NAC83_ARATH; NAC domain-containing protein 83
TrEMBL	A0A1U8HF81	0.0	A0A1U8HF81_CAPAN; NAC transcription factor
TrEMBL	A0A2G3AJL1	0.0	A0A2G3AJL1_CAPAN; NAC domain-containing protein 83
STRING	PGSC0003DMT400031045	1e-134	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1387	23	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	7e-78	NAC domain containing protein 83

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]