PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CA00g41250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ERF | ||||||||
Protein Properties | Length: 302aa MW: 33053.4 Da PI: 7.9283 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.1 | 2.9e-20 | 167 | 216 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ + +r++lg+f tae+Aa+a+++a+ +++g CA00g41250 167 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFNTAEDAARAYDRAAIEFRG 216 59*******.**********94....36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.02E-23 | 166 | 223 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.5E-32 | 167 | 224 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.803 | 167 | 224 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.9E-38 | 167 | 230 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-14 | 167 | 216 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.9E-22 | 167 | 224 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 8.0E-12 | 168 | 179 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-12 | 190 | 206 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence Send to blast |
MTKNSNFSNM HWLNKRFKQD GTSSSLQNNQ QFQQQIPRRL TGDQEYSVMV SALKNVINGN 60 IPIDSNQGLN MFSPFQYSTG MNATSSPSTS MSTSFEQVLG VPAEQEPCQF CRIQGCLGCD 120 IFGTTFGSSS SSAAAAAATA TATIAPVADN KKKSASTSAI AKKKKKNYRG VRQRPWGKWA 180 AEIRDPRKAA RVWLGTFNTA EDAARAYDRA AIEFRGPRAK LNFSFADYTV ETPEQQSTSS 240 SSPQQLQEEP QQSLQQGNNN SDFGSEIWDQ LMGDNEIQDW LTMMNFNGDS SDSTGGNVHS 300 V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-24 | 166 | 223 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 150 | 165 | KKKSASTSAIAKKKKK |
2 | 160 | 166 | AKKKKKN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016582027.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A2G2Y025 | 0.0 | A0A2G2Y025_CAPAN; Ethylene-responsive transcription factor | ||||
STRING | PGSC0003DMT400066343 | 1e-138 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 5e-30 | redox responsive transcription factor 1 |