PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g33100

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YA

Protein Properties

Length: 181aa MW: 20268.1 Da PI: 10.4227

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g33100	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	88.8	7.4e-28	11	65	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p++VNaKQy++Il+RR++Rak e kk k rkpylh SRh hAlrRpRg+gGrF CA00g33100 11 GPIFVNAKQYHGILRRRKSRAKEME-KKA-LKPRKPYLHLSRHLHALRRPRGCGGRF 65 69*****************9666.555.6***********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.4E-30	8	68	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	31.492	9	68	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	2.2E-23	12	65	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	6.7E-21	12	34	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	6.7E-21	42	65	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MLPLNLASDE GPIFVNAKQY HGILRRRKSR AKEMEKKALK PRKPYLHLSR HLHALRRPRG 60 CGGRFLNTRN MNGTMKDGKT NDTFRASDVQ NFYPTGSQNS EVLQSDSSNL SSPKETINSR 120 FYESSGVTNM YSSGNLDPFP FQNLRPLQVQ AIPDMMNTGL GILMTDKWVG TADSCCNLKV 180 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	1e-16	10	68	2	62	HAPB protein
4g92_A	1e-16	10	68	2	62	HAPB protein
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016546107.1	1e-132	PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1
TrEMBL	A0A1U8EFU6	1e-130	A0A1U8EFU6_CAPAN; nuclear transcription factor Y subunit A-10-like isoform X1
STRING	PGSC0003DMT400055061	1e-113	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3706	23	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34720.1	2e-20	nuclear factor Y, subunit A4