PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CA00g32430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 261aa MW: 29347.1 Da PI: 7.1408 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.2 | 4.8e-18 | 169 | 203 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG++y++ +l CA00g32430 169 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 203 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF016992 | 1.2E-82 | 2 | 250 | IPR016679 | Transcription factor, GATA, plant |
Gene3D | G3DSA:3.30.50.10 | 2.3E-14 | 162 | 200 | IPR013088 | Zinc finger, NHR/GATA-type |
SMART | SM00401 | 7.2E-16 | 163 | 213 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.807 | 163 | 199 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.04E-15 | 164 | 227 | No hit | No description |
CDD | cd00202 | 3.04E-14 | 168 | 215 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 169 | 194 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 6.9E-16 | 169 | 203 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MDVYGVSAPD LFRIDDLLDF SNDQIFSTNN TNPDSSSHQY HHQPHSHNSS SAATATYYDN 60 LLPNSSDDFT DNLYVPSDDV AELEWLSNFV EDSFSNFSAN SITGTMNLSS NTTSFHGRSR 120 SKRSRSTSSW TTSLQNPNTT TTTKNKESSS VHTRERSFSP MDEDAPRRCT HCASEKTPQW 180 RTGPLGPKTL CNACGVRYKS GRLVPEYRPA ASPTFVLTQH SNSHRKVMEL RRQKEMLHQP 240 QQLPPPTTEE GMYGRHFRVC * |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 117 | 122 | RSRSKR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016545286.1 | 0.0 | PREDICTED: GATA transcription factor 4-like | ||||
Swissprot | O49741 | 3e-74 | GATA2_ARATH; GATA transcription factor 2 | ||||
TrEMBL | A0A1U8EFW6 | 0.0 | A0A1U8EFW6_CAPAN; GATA transcription factor | ||||
TrEMBL | A0A2G3AMG3 | 0.0 | A0A2G3AMG3_CAPAN; GATA transcription factor | ||||
TrEMBL | A0A2G3DJC6 | 0.0 | A0A2G3DJC6_CAPCH; GATA transcription factor | ||||
STRING | PGSC0003DMT400066953 | 1e-140 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5776 | 19 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G60530.1 | 4e-63 | GATA transcription factor 4 |
Publications ? help Back to Top | |||
---|---|---|---|
|