PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CA00g10990

Organism

Capsicum annuum

Taxonomic ID

4072

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bZIP

Protein Properties

Length: 382aa MW: 43298.5 Da PI: 8.438

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CA00g10990	genome	PEP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.9	2.8e-10	99	127	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k++rr+++NReAAr+sR RKka++++Le+ CA00g10990 99 KVQRRLAQNREAARKSRMRKKAYVQQLET 127 99*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.5E-5	95	155	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.117	97	141	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.44E-7	99	134	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.1E-8	99	141	No hit	No description
Pfam	PF00170	6.5E-7	99	129	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	102	117	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.0E-28	185	258	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0042742	Biological Process	defense response to bacterium
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MTSPTTQFAP TRRMGIYEPF HQMSVWEDAF RGDIVPSVDA SMISQPNDRP DDKVKQTYIL 60 IILDNKIQIS TVSGYTSGEQ HIPSGSGDNQ APRRSISEKV QRRLAQNREA ARKSRMRKKA 120 YVQQLETSRL KLAQLELELE RARQQGLYML GSNSNMGILG TINPGIAAFE IEYSHWVEEQ 180 QKKNAELRSI LQSPVSDLEL QLLVENVLSH YFNLFRMKAD AAKADVFYLM SGMWRTSVER 240 FFLWIGGFKP SELINVVMPQ LEPLTDQQII KVCNLRHCCQ QAEDALTQGM DKLHQTLAQS 300 ILNMNTGAGN YASQMVSSME NLEALESFVN QADHLRQQTL QQMSIILTTR QAARGLLAFG 360 EYLQRLRALS SLWAARPREP T*

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MTSPTTQFAP TRRMGIYEPF HQMSVWEDAF RGDIVPSVDA SMISQPNDRP DDKVKQTYIL  60
IILDNKIQIS TVSGYTSGEQ HIPSGSGDNQ APRRSISEKV QRRLAQNREA ARKSRMRKKA  120
YVQQLETSRL KLAQLELELE RARQQGLYML GSNSNMGILG TINPGIAAFE IEYSHWVEEQ  180
QKKNAELRSI LQSPVSDLEL QLLVENVLSH YFNLFRMKAD AAKADVFYLM SGMWRTSVER  240
FFLWIGGFKP SELINVVMPQ LEPLTDQQII KVCNLRHCCQ QAEDALTQGM DKLHQTLAQS  300
ILNMNTGAGN YASQMVSSME NLEALESFVN QADHLRQQTL QQMSIILTTR QAARGLLAFG  360
EYLQRLRALS SLWAARPREP T*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00247	DAP	Transfer from AT1G77920	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT014216	0.0	BT014216.1 Lycopersicon esculentum clone 133394F, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016569358.1	0.0	PREDICTED: transcription factor TGA7-like isoform X1
Swissprot	Q93ZE2	1e-156	TGA7_ARATH; Transcription factor TGA7
TrEMBL	A0A2G2ZQC6	0.0	A0A2G2ZQC6_CAPAN; Transcription factor TGA7
STRING	XP_009776929.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA780	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-146	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]