PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv_017650_gaui.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | HB-other | ||||||||
Protein Properties | Length: 222aa MW: 25433.3 Da PI: 6.7953 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.1 | 4.1e-20 | 68 | 123 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++R+ t++ql++Le+++++++yp++++++eLA++lgLte+q++ WF+ rR k+k+ Bv_017650_gaui.t1 68 KRRRFKTPSQLQALEDFYNEHKYPTESMKAELADHLGLTEKQISGWFCHRRLKDKR 123 6777789***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.43.10 | 1.0E-13 | 13 | 44 | IPR016167 | FAD-binding, type 2, subdomain 1 |
Pfam | PF00941 | 2.1E-4 | 13 | 45 | IPR002346 | Molybdopterin dehydrogenase, FAD-binding |
Gene3D | G3DSA:1.10.10.60 | 8.8E-21 | 49 | 123 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.957 | 64 | 124 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.59E-18 | 66 | 131 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.2E-19 | 67 | 128 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.1E-17 | 68 | 123 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.76E-17 | 68 | 123 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0016491 | Molecular Function | oxidoreductase activity | ||||
GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MDLSGTDLCH FNLFELKSKY PDARLVIGNT EVGIEMRLKR MQYKSQGFTG ETNELQGEEN 60 KALPEKNKRR RFKTPSQLQA LEDFYNEHKY PTESMKAELA DHLGLTEKQI SGWFCHRRLK 120 DKRIVNGELN PPGRQDLSSG VIQDRGSGLR QDSCSSTKQG DYRLSDVREV ESRRFGHNDL 180 PAAEIKYERR MLDDGTEMDD TSSESNSALP GSFYPHNRSP LN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010673742.1 | 1e-121 | PREDICTED: homeobox-DDT domain protein RLT1 | ||||
TrEMBL | A0A0J7YNI6 | 1e-165 | A0A0J7YNI6_BETVU; Uncharacterized protein (Fragment) | ||||
STRING | XP_010673742.1 | 1e-120 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 6e-47 | HB-other family protein |