PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bv_013090_tsop.t2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Family | B3 | ||||||||
Protein Properties | Length: 192aa MW: 22021.3 Da PI: 9.8097 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55 | 1.5e-17 | 93 | 189 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..gr.se 89 f++++ +s+v+ + l +p ++a+ + ++ + k+++l+ ++g+s++vk+ +++ + l +GWk+Fv +n+L++gD ++F+l+ ++ s+ Bv_013090_tsop.t2 93 FKSIMYHSHVTYKYKLAVPSSHASIYFSS--KCKEIILNGPNGKSYSVKV--YVGKKITELLNGWKSFVLDNDLQVGDACIFELInkNSrSK 180 788999*****************888766..5679***************..44444555666********************984222355 PP E..EEEEE- CS B3 90 felvvkvfr 98 ++v++fr Bv_013090_tsop.t2 181 NAYKVSIFR 189 556666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.0E-21 | 88 | 190 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.3E-21 | 88 | 189 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.36E-21 | 91 | 189 | No hit | No description |
SMART | SM01019 | 9.3E-12 | 93 | 191 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.662 | 93 | 191 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-16 | 93 | 189 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MRKVSCAMKR KYDLKNKVVE EENEEDDISI EILDEFSPKL KQVKTTVSLD SSAIYDVECS 60 SYKSKGNDKI SVDMRQKRLK RKLDAFVSSY PHFKSIMYHS HVTYKYKLAV PSSHASIYFS 120 SKCKEIILNG PNGKSYSVKV YVGKKITELL NGWKSFVLDN DLQVGDACIF ELINKNSRSK 180 NAYKVSIFRI SS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010667920.2 | 1e-135 | PREDICTED: putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A0J8DW25 | 1e-136 | A0A0J8DW25_BETVU; Uncharacterized protein | ||||
STRING | XP_010667920.1 | 1e-135 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 1e-07 | B3 family protein |