PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bv_009650_oyjz.t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 202aa MW: 23063 Da PI: 9.6386 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.3 | 4.6e-10 | 43 | 67 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++Ia++++ gRt++++k++w+++l Bv_009650_oyjz.t1 43 RWAAIAARLP-GRTDNDVKNHWNSHL 67 7*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.95E-8 | 42 | 74 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.8E-12 | 42 | 68 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.9E-8 | 43 | 67 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.748 | 43 | 67 | IPR017877 | Myb-like domain |
CDD | cd00167 | 4.22E-7 | 43 | 67 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 202 aa Download sequence Send to blast |
MHPLYKCLSF LVCKVARYLK SRNYVVDKTK VSCPKYYACY FYRWAAIAAR LPGRTDNDVK 60 NHWNSHLRKR KTINVYPETT PSKSHTTRHM VQWESIRLET EARLSLESLY NPSGYSRTNS 120 DHFFSMWNSE VGESFRKIQN ARPLKIDRVS PSSEACSGVT GQVPQHVGVK TEQQQRTDSG 180 SVASGDTSDT AMNMLLDSPT SE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010667573.1 | 1e-114 | PREDICTED: transcription factor MYB30-like | ||||
TrEMBL | A0A0J8B662 | 1e-151 | A0A0J8B662_BETVU; Uncharacterized protein | ||||
STRING | XP_010667573.1 | 1e-114 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G61250.1 | 1e-36 | myb domain protein 17 |