PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_003440_hupu.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 460aa    MW: 53131.8 Da    PI: 10.2055
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_003440_hupu.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.55.7e-1972160399
                        EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                        k+l+ s+v+   +l lp +f+++h   +++++ ++le+++g+++e k+      +++ l++GW++F+++n+L++gD+vvF+l++ ++f  +v
  Bv_003440_hupu.t2  72 KQLLESHVSGGYNLALPTPFCRAHL--PPKDTIMVLETKTGEQYEAKY----LARHFRLSGGWRKFARDNKLEAGDVVVFTLVEATKF--KV 155
                        8999********************5..3467799**************....444588***********************9987777..99 PP

                        EEE-S CS
                 B3  95 kvfrk 99 
                         ++r+
  Bv_003440_hupu.t2 156 YIIRT 160
                        99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-2266164IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.84670161IPR003340B3 DNA binding domain
SMARTSM010192.1E-2070161IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-2070161IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-1671160IPR003340B3 DNA binding domain
CDDcd100171.50E-2571159No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MRNPVKKNKL RDEKINKENR GKLKRLRANK IRRKYLRLYQ PGQVLGKCRM VQVKRVQSKM  60
IIEHPATIST MKQLLESHVS GGYNLALPTP FCRAHLPPKD TIMVLETKTG EQYEAKYLAR  120
HFRLSGGWRK FARDNKLEAG DVVVFTLVEA TKFKVYIIRT SANEVTLPVH LLNPVNHVKQ  180
SVSSQTTNQK LIIYRRGKEH QVAEIYNRRS LRLKLKNAGA GSMLYPGEIL FSNITNFEDF  240
KAIMHELLQN HKLPYSTLHD YYELCCSQNA FLHAHLLKGI NPTLNYQIIT EAIKRIIFET  300
VSIANALKTC KLSTFLYKCS LWEDTLNAYE GLGMNVGFLL ARLHHLRSLV FSLEGAADHR  360
SRYKEASHER GLAEGEVKKL KLVLAKLRKV SDDMKLKPLE DKYREGNSWL ACVQAEITNL  420
EVLLAELQKF FSQYDAHIES LKLNAKRHEF EFQEELSAPW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019102987.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBLA0A0J8DYM80.0A0A0J8DYM8_BETVU; Uncharacterized protein
STRINGXP_010666642.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.18e-29B3 family protein