PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_003440_hupu.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 401aa    MW: 45959.1 Da    PI: 9.1546
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_003440_hupu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.94.5e-1913101399
                        EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                        k+l+ s+v+   +l lp +f+++h   +++++ ++le+++g+++e k+      +++ l++GW++F+++n+L++gD+vvF+l++ ++f  +v
  Bv_003440_hupu.t1  13 KQLLESHVSGGYNLALPTPFCRAHL--PPKDTIMVLETKTGEQYEAKY----LARHFRLSGGWRKFARDNKLEAGDVVVFTLVEATKF--KV 96 
                        8999********************5..3467799**************....444588***********************9987777..99 PP

                        EEE-S CS
                 B3  95 kvfrk 99 
                         ++r+
  Bv_003440_hupu.t1  97 YIIRT 101
                        99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-227105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.2E-2111102IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.1E-2011102IPR003340B3 DNA binding domain
PROSITE profilePS5086313.84611102IPR003340B3 DNA binding domain
CDDcd100172.17E-2612100No hitNo description
PfamPF023629.4E-1712101IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MIIEHPATIS TMKQLLESHV SGGYNLALPT PFCRAHLPPK DTIMVLETKT GEQYEAKYLA  60
RHFRLSGGWR KFARDNKLEA GDVVVFTLVE ATKFKVYIIR TSANEVTLPV HLLNPVNHVK  120
QSVSSQTTNQ KLIIYRRGKE HQVAEIYNRR SLRLKLKNAG AGSMLYPGEI LFSNITNFED  180
FKAIMHELLQ NHKLPYSTLH DYYELCCSQN AFLHAHLLKG INPTLNYQII TEAIKRIIFE  240
TVSIANALKT CKLSTFLYKC SLWEDTLNAY EGLGMNVGFL LARLHHLRSL VFSLEGAADH  300
RSRYKEASHE RGLAEGEVKK LKLVLAKLRK VSDDMKLKPL EDKYREGNSW LACVQAEITN  360
LEVLLAELQK FFSQYDAHIE SLKLNAKRHE FEFQEELSAP W
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019102988.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X3
RefseqXP_019102989.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X4
RefseqXP_019102990.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X4
TrEMBLA0A0J8B4730.0A0A0J8B473_BETVU; Uncharacterized protein
TrEMBLA0A0J8DYM80.0A0A0J8DYM8_BETVU; Uncharacterized protein
STRINGXP_010666642.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.12e-28B3 family protein