PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bv_003400_wmar.t1

Organism

Beta vulgaris

Taxonomic ID

161934

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta

Family

Protein Properties

Length: 315aa MW: 36094.8 Da PI: 8.4818

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bv_003400_wmar.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.6	6e-15	39	129	1	97
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kv+++s+v+ ++ lp +f+e+h ++ ++ +tle++s + ++ k+ +rk + l++GWk+F+ +L +gD++vF+l++ +f+ Bv_003400_wmar.t1 39 FIKVMLKSHVTGGFWMGLPASFCEKHlPLN---DTSITLETQSKKLYKAKYLVRKAG----LSGGWKGFAICERLFVGDVLVFHLVSAAKFK 123 89**********************7554...457***********777777....*********************99887776 PP .EEEEE CS B3 92 lvvkvf 97 +++ Bv_003400_wmar.t1 124 EPARIC 129 666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.6E-16	31	122	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.06E-20	32	121	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.01E-20	37	123	No hit	No description
SMART	SM01019	8.5E-13	39	132	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	8.938	39	130	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.8E-13	39	130	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MPKRFRLNDN QENAQGKIQS VFSQAEEIRS KLDPRYPSFI KVMLKSHVTG GFWMGLPASF 60 CEKHLPLNDT SITLETQSKK LYKAKYLVRK AGLSGGWKGF AICERLFVGD VLVFHLVSAA 120 KFKEPARICD VTAPSSNTLS TFENFSIVIN NLLDYELADN IQWSYYELCC SQNGLLHDHL 180 PKWMNHILVQ GIIIETVTIA DALRQCELST SKDTFVLWDK TLNALELLGM NIGFLRAHLD 240 RLQKIVHDPE VATFRQKCLE LCSENARSKD KIRCLKEKLA EMKIMHNKRG ADIENLKAKV 300 ENHELKFQEQ VHALW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021751876.1	1e-152	B3 domain-containing protein Os01g0234100-like
TrEMBL	A0A0J8DYM3	0.0	A0A0J8DYM3_BETVU; Uncharacterized protein
STRING	XP_010666632.1	1e-137	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-34	B3 family protein