PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_003390_znhr.t2
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 391aa    MW: 44587 Da    PI: 8.6124
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_003390_znhr.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3444e-141495798
                       .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                       +s++++s    lp +f++ +    ++++  +le++ g++++vk+  rk+     l++GW++F  a +L +gD++vF+l++ ++f  +v v+r
  Bv_003390_znhr.t2 14 NSSTSSS--KGLPVPFCKMYLP--QNDTYFILENQYGKKYRVKYLARKT----ALSGGWRGFSIAEELSQGDVLVFHLIQPTKF--KVYVLR 95
                       3444444..69******99942..35668***************44444....4*************************98888..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.364697IPR003340B3 DNA binding domain
SMARTSM010193.7E-141197IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-171396IPR015300DNA-binding pseudobarrel domain
CDDcd100171.37E-151395No hitNo description
PfamPF023622.4E-111395IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-141497IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MKELKAKLRK FKRNSSTSSS KGLPVPFCKM YLPQNDTYFI LENQYGKKYR VKYLARKTAL  60
SGGWRGFSIA EELSQGDVLV FHLIQPTKFK VYVLRSDLTE NDKPRVIQNL PAEVVQRGLE  120
VGTLEPSIET HRPSSISEDD SLAEMSKSNR KNPSQKDVSK SNSGTPKHVL YPDAVGDGGI  180
ASFDEFVILL EDLLKKEYDL PHNLKHSYYK LCCRNEFLHI HLLEGINPFL IAGIIIETVN  240
VALAMKSCEL HTSKNEFSIW DEKLKSLKIL GMEVGFLVSH LDNLQRVAYD PEATRNRQQY  300
LELCSEHAIS EREINNVEAK LSELIGVFDK RADEIKKLKS EIKNHKSKFL EQVTYNCRCD  360
SVGELNKVGA FPSRESEAFW ARTMGHHPRG H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666631.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X3
TrEMBLA0A0J8B4680.0A0A0J8B468_BETVU; Uncharacterized protein
STRINGXP_010666629.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.19e-23B3 family protein