PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_003390_znhr.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family B3
Protein Properties Length: 442aa    MW: 50730.3 Da    PI: 9.079
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_003390_znhr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.12.5e-1657146198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k +++s+v +  ++ lp +f++ +    ++++  +le++ g++++vk+  rk+     l++GW++F  a +L +gD++vF+l++ ++f  
  Bv_003390_znhr.t1  57 FIKPMLKSHVASCFWMGLPVPFCKMYLP--QNDTYFILENQYGKKYRVKYLARKT----ALSGGWRGFSIAEELSQGDVLVFHLIQPTKF-- 140
                        89*********************99942..35668***************44444....4*************************98888.. PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                        +v v+r
  Bv_003390_znhr.t1 141 KVYVLR 146
                        777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-1950148IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.65E-2251147IPR015300DNA-binding pseudobarrel domain
CDDcd100173.02E-2455146No hitNo description
PfamPF023621.3E-1357146IPR003340B3 DNA binding domain
SMARTSM010199.4E-2157148IPR003340B3 DNA binding domain
PROSITE profilePS5086312.49257148IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MKELKAKLRK FKRNSSTSSS KGLYYQKREV KRQNIMPSII RQAEELRSRL EANYPCFIKP  60
MLKSHVASCF WMGLPVPFCK MYLPQNDTYF ILENQYGKKY RVKYLARKTA LSGGWRGFSI  120
AEELSQGDVL VFHLIQPTKF KVYVLRSDLT ENDKPRVIQN LPAEVVQRGL EVGTLEPSIE  180
THRPSSISED DSLAEMSKSN RKNPSQKDVS KSNSGTPKHV LYPDAVGDGG IASFDEFVIL  240
LEDLLKKEYD LPHNLKHSYY KLCCRNEFLH IHLLEGINPF LIAGIIIETV NVALAMKSCE  300
LHTSKNEFSI WDEKLKSLKI LGMEVGFLVS HLDNLQRVAY DPEATRNRQQ YLELCSEHAI  360
SEREINNVEA KLSELIGVFD KRADEIKKLK SEIKNHKSKF LEQVTYNCRC DSVGELNKVG  420
AFPSRESEAF WARTMGHHPR GH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666629.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A0J8B7N60.0A0A0J8B7N6_BETVU; Uncharacterized protein
STRINGXP_010666629.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-36B3 family protein