PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_002510_sgmx.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family WRKY
Protein Properties Length: 336aa    MW: 37344.1 Da    PI: 6.8384
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_002510_sgmx.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.19e-34185242259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+
  Bv_002510_sgmx.t1 185 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCMVKKRVERSFQDPSTVITTYEGQHNHP 242
                        8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.3E-35169244IPR003657WRKY domain
SuperFamilySSF1182905.23E-30176244IPR003657WRKY domain
PROSITE profilePS5081133.051179244IPR003657WRKY domain
SMARTSM007743.6E-40184243IPR003657WRKY domain
PfamPF031061.7E-26185242IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MSDEARNYHN SYNYHHNPSL TLIHEDPDHA LLDNNNFFPY SYNPTSSNLY FSDFINGYSM  60
DYPTLPRSVA LSPTPASSEV FSSVIDGGGD EKPRMAKEKE GASAVGSGEN PGTPNSSISS  120
SSTEGGGADD RSGVKNEDKH PFKACDDQGG DDESKKVNKG KKKGEKKQRE PRFAFMTKSE  180
VDQLEDGYRW RKYGQKAVKN SPYPRSYYRC TTQKCMVKKR VERSFQDPST VITTYEGQHN  240
HPVPATLRGH AAALLPQYSM LAPAPPSSSS NFPHELLAQL GHGGADNMSV GVSSFSQFSH  300
LQQLHHRHNI HQLQFPTDDY GLLQDVVPPF LLKEEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-29174245778Probable WRKY transcription factor 4
2lex_A3e-29174245778Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666507.10.0PREDICTED: probable WRKY transcription factor 71
TrEMBLA0A0J8B5180.0A0A0J8B518_BETVU; Uncharacterized protein
STRINGXP_010666507.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.14e-55WRKY DNA-binding protein 71