PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bv_000930_crae.t1
Organism
Beta vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
Family MYB
Protein Properties Length: 282aa    MW: 32347.5 Da    PI: 7.1256
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bv_000930_crae.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92.1e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+ Ed++l+d++k +G g+W+  +++ g++R++k+c++rw++yl
  Bv_000930_crae.t1 14 KGAWTAMEDKILIDYIKTHGEGRWRNLPKRAGLKRCGKSCRLRWLNYL 61
                       79********************************************97 PP
2Myb_DNA-binding54.82.1e-1767111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg+ T++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  Bv_000930_crae.t1  67 RGNITPDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111
                        7999******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.551961IPR017930Myb domain
SuperFamilySSF466895.35E-2912108IPR009057Homeodomain-like
SMARTSM007171.3E-141363IPR001005SANT/Myb domain
PfamPF002491.3E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-241568IPR009057Homeodomain-like
CDDcd001672.35E-111661No hitNo description
PROSITE profilePS5129426.03262116IPR017930Myb domain
SMARTSM007171.2E-1666114IPR001005SANT/Myb domain
PfamPF002491.6E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2569117IPR009057Homeodomain-like
CDDcd001672.01E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006970Biological Processresponse to osmotic stress
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGRSPCCAKE GLNKGAWTAM EDKILIDYIK THGEGRWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI TPDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLSKRLNQCN  120
NQAPNTLTTY HKKLQKDQKN KKPISIDQHK QTLESNVVRT KAVRCTKVFI TPEPQPQQHI  180
LHANNITDVA AANHSSMVYN EDDSSLGLDE DYNLSSDFMM EDFNMGDFNL ISELLTTNYS  240
DVCDFSTECS NNASDLSPNS PEQPFVFSQE LLEDWLGDQQ VM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019102913.10.0PREDICTED: transcription factor MYB23
TrEMBLA0A0J8B8960.0A0A0J8B896_BETVU; Uncharacterized protein
STRINGXP_010666251.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.12e-64MYB family protein